BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0135.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...   333   1e-92
gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum serope...    57   2e-09

>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  333 bits (853), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/291 (65%), Positives = 234/291 (80%)

Query: 4   MQLKYSVFPISAILIWSGNTIVSKMAAGVIEPAAMSFYRWLMAGLLLTPFCLRGVWRQRH 63
           M  K+  FP+ A+LIW+GNT++SKM+A VI P  +SFYRW++A LL++PF  R  W  R 
Sbjct: 1   MHYKHLWFPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARA 60

Query: 64  QIRPHLWKVVVLALFGMVLYQSLAYFAAATSSATSMGMIASLMPLLTLLLSSILLREPPT 123
           QIRPHL K+VVLAL GMVL+QSLAYFAAAT+SATSMG+IASLMPLLTL+LS  LL EPPT
Sbjct: 61  QIRPHLGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT 120

Query: 124 WGTLFGGMLSLFGLAILIGKGHPAQLFTSGVVFGDLLMLVATIAYAFYSVLLKRWALPIA 183
            GTL GG+LSL GLA+LIG+GHP  LF  GVV GDLLML+ATIAY  Y V+L+RWALP+ 
Sbjct: 121 VGTLGGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR 180

Query: 184 TWHLLYLQIWVAVILLLPLCLAAPYSPVTAANLPLLLYAGIAASIISQVLWMNGVAHLGA 243
           TW LLY+Q+ +AV+LL P  +   +SPVT  NLP+LLYAGIAASIISQ LWM GVA+LGA
Sbjct: 181 TWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA 240

Query: 244 THSIMFMNLSPIFTVIIAMVVLDEALHSYHAVGGGITLAGVVLAQLIKRRI 294
           +   +F+NL P+FTVIIA++ L E LH YHAVGG ITL GV++AQ+ ++R+
Sbjct: 241 SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRL 291


>gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 12/233 (5%)

Query: 70  WKVVVLALFGMVLYQSLAYFAAATSSATSMGMIASLMPLLTLLLSSILLREPPT---WGT 126
           W V + +  G  L+        + ++A S G+I S +P +  ++S I L+E  +   WG 
Sbjct: 71  WLVFLESFLGNFLFTLCMITGVSMTNAVSAGVIMSAIPAVVAVMSWIFLKEKISLRVWGA 130

Query: 127 LFGGMLSLFGLAILIGKGHPAQLFTSGVV--FGDLLMLVATIAYAFYSVLLKRWALPIAT 184
           +  G + + GL  L   GH A   + G     G+ L+  A +  A Y+V+ K+    +  
Sbjct: 131 VACGAVGI-GLLSLAKDGHGASAASGGQYAWLGNGLVFCAVLCEAAYAVIGKKLTAVLTP 189

Query: 185 WHL-LYLQIWVAVILLLPL----CLAAPYSPVTAANLPLLLYAGIAASIISQVLWMNGVA 239
             +   + +W  ++L+ P+     L   +  V A    LLL+ G+AAS+ +  LWM G+ 
Sbjct: 190 KRISAVINLW-GLLLMTPMGVYTALHFDFGAVPANMWWLLLFYGLAASVWTVWLWMTGLK 248

Query: 240 HLGATHSIMFMNLSPIFTVIIAMVVLDEALHSYHAVGGGITLAGVVLAQLIKR 292
            + A  + +F  + P+   ++ ++ L E+L +  A    I LAG++LA L  R
Sbjct: 249 VVPAARAGVFTVMLPVSAALVGVLALGESLSALQAGAFAIALAGMLLATLPGR 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,703
Number of extensions: 35785
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 7
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)