BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0132.p
         (456 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her...   710   0.0  

>gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 588

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/448 (75%), Positives = 383/448 (85%), Gaps = 11/448 (2%)

Query: 20  GAPFRQEDWDKAKNQGLDKLQQQKYAAARIAESQASIDPDDQQADLSVHYDSGPRFTLGP 79
           G PFRQ+DWDKAKN GL  LQQ+KYAAARIA+S+A I P  QQADLSV YDSGP FTLG 
Sbjct: 141 GEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARIAPQAQQADLSVRYDSGPAFTLGA 200

Query: 80  LQISGTKRYPESIIRNVNPLNVGEEYDVNRLLSLQRQIQNTPYFSNAIVGIDNDPENADM 139
           LQI+GT+RYPESIIRNV+PL VGE YDV+RLL+LQRQIQNTPYFSNAIV ID+DP + D 
Sbjct: 201 LQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQIQNTPYFSNAIVAIDDDPAHPDQ 260

Query: 140 APVKVQVTEFATQRIRTGLGYATDTGAQVEGRYSHYNVFNKAYVFDSQLRLEQKRQYGLL 199
            PVKVQVTEF TQRIRTG+GY TDTGAQ EGRYSHYNVFN+AYVFDSQLRLEQKRQYGLL
Sbjct: 261 TPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYNVFNRAYVFDSQLRLEQKRQYGLL 320

Query: 200 NLAMPPDGKAFVNSVNASMERTRLEGVDLRSLRTGIKRARTGEFYDTAYTLTYYRDQLQQ 259
           +LAMPPD KAFVNS+N + +RT LEG+DLR+ + G+KRAR  + YDT Y+LTYYRD+L Q
Sbjct: 321 SLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLKRARNSDNYDTTYSLTYYRDELVQ 380

Query: 260 ENGATLPADTVVSQGTHQALVPGFSWARRNVDDPIFPRKGNLLTLETGFAVKGVITDQTF 319
           ENG TLPA+T+V+ G H+ALVPGF+W+RRNVD+PIFPR GNLLTLE G A+KGV+TDQ+F
Sbjct: 381 ENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFPRHGNLLTLEAGLALKGVLTDQSF 440

Query: 320 GRLYGRFKQYLPVAKRDLIILRTELGGVFTKGSASEVPASLLFRAGGNDSVRGYSYQSIG 379
            RLYGRFKQ++PV KRD+++LR ELGGVFT G A  VPASLLFR GGNDSVRGYSYQSIG
Sbjct: 441 SRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSVPASLLFRTGGNDSVRGYSYQSIG 500

Query: 380 NEVNGTVYPTKYLVTGSAEYQRWFTEKWGAAVFYDVGAAENL-----------XGARWRS 428
           NE NGTVYPTKYL  GS EYQRWF+E WGAAVFYD+GAA +             GARWRS
Sbjct: 501 NEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMGAAADNWSNKTFYHGVGTGARWRS 560

Query: 429 PVGSLNLDLAYGVQKKQIRPHISLGIAF 456
           PVG+LNLDLAYG+QK+QIRPHISLGIAF
Sbjct: 561 PVGTLNLDLAYGIQKRQIRPHISLGIAF 588


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,441,151
Number of extensions: 60702
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,203,190
Effective search space: 442773920
Effective search space used: 442773920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)