BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0131.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310868|ref|YP_003774960.1| ferredoxin-NADP+ reductase [Her...   337   6e-94
gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation N...    61   1e-10

>gi|300310868|ref|YP_003774960.1| ferredoxin-NADP+ reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  337 bits (864), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 174/264 (65%), Positives = 208/264 (78%), Gaps = 2/264 (0%)

Query: 2   NAQIPA-TEKATQETLVSVHRWTDKLLTFRTTRPAEYRFTPGQFARLGLQVNGEMVWRAY 60
           N  I A +EKA+ E L+ VHRWTDKLL+FRTTRPA YRFT GQFARLGL+++G++V RAY
Sbjct: 6   NVSIDAYSEKASCERLLWVHRWTDKLLSFRTTRPAGYRFTAGQFARLGLEIDGQVVSRAY 65

Query: 61  SITSAETENELEYYAIVVPNGLFTTALNALKPGDPVWLEKLSYGFMTPDRFSGGDDFWML 120
           SITSAE E+ LEYYAI+VP G FT+ L+AL+PGDPVW+EKLSYGFMT DRFS G   WML
Sbjct: 66  SITSAEHEDVLEYYAIIVPGGQFTSRLDALQPGDPVWVEKLSYGFMTADRFSDGRQLWML 125

Query: 121 ATGTGLGPYVSILQQREVWQQFRNLVLVHCVRHEEELTYREKFESLREQAAAQNLPGRLQ 180
           ATGTGLGPYVSILQQ EVWQ+F +LVLVH VR   EL Y +KF  LR+QAAAQ  P RL 
Sbjct: 126 ATGTGLGPYVSILQQPEVWQRFEDLVLVHGVRQCAELAYADKFAQLRQQAAAQGWPARLH 185

Query: 181 LIPMTTRDDG-AAHPDRLHGRITSALRDGSLERKAGLAINADASRLMVCGNPDMITEVRE 239
            +   TR++   + P  L GRIT  LR G LE+ AGL++  D +R+M CGNP+M+TEVRE
Sbjct: 186 SLRCVTREEVLPSSPGLLAGRITDLLRGGQLEQAAGLSLTVDDARVMACGNPEMVTEVRE 245

Query: 240 ILRERGLGPCRRAGGGQFITEDYW 263
           +LR+RG+ P RRAGGGQF+TEDYW
Sbjct: 246 LLRQRGMSPLRRAGGGQFVTEDYW 269


>gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation NADH
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 15/237 (6%)

Query: 15  TLVSVHRWTDKLLTFRTTRPAE----YRFTPGQFARLGLQVNGEMVWRAYSITSAETENE 70
           T+  V + T   +      PAE    + +  GQ   L  ++NGE + R+YSI SA  E +
Sbjct: 8   TISDVKQETRDTIVVSFAVPAELQDTFSYQQGQHLTLRSEINGEDLRRSYSICSAVQERQ 67

Query: 71  LEYYAIVVPNGLFTT-ALNALKPGDPVWLEKLSYGFMTPDRFSGGDDFWMLATGTGLGPY 129
           L       P GLF+  A  +  PG  + +      F  P        +   A G+G+ P 
Sbjct: 68  LRVAIKRAPGGLFSNWANESFVPGQRIDVMPPMGHFNVPLEAGNRKHYLAFAAGSGITPM 127

Query: 130 VSILQQREVWQQFRNLVLVHCVRHEEELTYREKFESLREQAAAQNLPGRLQLIPMTTRDD 189
           +SI++   + +   +  LV+  R    + ++E+   L++         R  ++ + +R+ 
Sbjct: 128 MSIIKTTLLSEPHSHFTLVYANRASSSVIFKEELTDLKDAYLE-----RFNVVYVMSREQ 182

Query: 190 GAAHPDRLHGRITSALRDGSLERKAGLAINADASRLMVCGNPDMITEVREILRERGL 246
                +  +GRI  A  D        L    D     +CG  +M+  V   L+  GL
Sbjct: 183 QDV--ELFNGRIDRAKCDAFFASWIDL---KDVDAAFLCGPEEMVQAVAASLQAHGL 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 895,863
Number of extensions: 37856
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)