BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0118.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase...   308   3e-85
gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase...    59   4e-10

>gi|300313418|ref|YP_003777510.1| 3-hydroxyacyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  308 bits (788), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 152/226 (67%), Positives = 176/226 (77%), Gaps = 2/226 (0%)

Query: 1   VGMHFFNPVPLMALVEIISGLASDAAVAECVYDTALAWGKNPVHTKSTPGFIVNRVARPY 60
           VGMHFFNPVP+MALVEIISGLASDAA+A+C++DTALAWGK PV  +STPGFIVNR+ARPY
Sbjct: 147 VGMHFFNPVPMMALVEIISGLASDAALAQCLHDTALAWGKTPVMARSTPGFIVNRLARPY 206

Query: 61  YAEALRILNEQAAGPATIDAILREAGGFRMGPFELMDLIGHDVNFAVTQSVFHAYFTDPR 120
           YAE LR+L+E  A PATIDA++REAGGFRMGPFELMDLIGHDVNFAVTQSVFHAYF DPR
Sbjct: 207 YAEGLRMLHEGGAQPATIDAVMREAGGFRMGPFELMDLIGHDVNFAVTQSVFHAYFNDPR 266

Query: 121 FTPSLIQQELVNAGFLGRKSGRGFYRYGADAVAPTPATEAAVEHASQMVQLSGTGPLAEA 180
           FTPSLIQQELV+AG+LGRKSGRGFYRYG  A AP P TE      +   QL G  PL E 
Sbjct: 267 FTPSLIQQELVHAGYLGRKSGRGFYRYGEAAGAPRPETERDYPKPTATPQLYGDHPLVEM 326

Query: 181 LAARLGNVSVERSSTPGADDAVLQCGSARAYLTDGRSATRRAADNR 226
           +  R         + P  D  +++  +A   +TDGRSAT RA +++
Sbjct: 327 IHTRYPGQVQRHPARP--DQLLMKVNAACLCITDGRSATLRAWEHQ 370


>gi|300309597|ref|YP_003773689.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 805

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 18/168 (10%)

Query: 2   GMHFFNPVPLMALVEIISGLASDAAVA---ECVYDTALAWGKNPVHTKSTPGFIVNRVAR 58
           G+HFFNP   M LVE+I   +++  +    E    T L  GK  V    TP F+ NRV  
Sbjct: 154 GVHFFNPPRYMHLVELIPTQSTEPHILDQLEAFLTTTL--GKGVVRAFDTPNFVANRVG- 210

Query: 59  PYYAEALRILNEQAAGPATIDAILR----EAGGFRMGPFELMDLIGHDVNFAVTQSVFHA 114
             +     I+  +  G  ++D +      + G  + G F   D++G D    V +++   
Sbjct: 211 -VFGILATIIEAEKYG-LSVDVVDDLTGAKLGRAKSGTFRTADVVGLDTMGHVIRTMQDN 268

Query: 115 YFTDPRF----TPSLIQQELVNAGFLGRKSGRGFY-RYGADAVAPTPA 157
              DP F    TP L+ + LV  G LG+KSG GFY + G D +   PA
Sbjct: 269 LKDDPFFSSYATPPLLAK-LVEQGALGQKSGAGFYKKVGKDILRIDPA 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 688,070
Number of extensions: 26070
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)