BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0116.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313416|ref|YP_003777508.1| NAD-dependent aldehyde dehydrog...   382   e-107

>gi|300313416|ref|YP_003777508.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 561

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/292 (66%), Positives = 227/292 (77%), Gaps = 1/292 (0%)

Query: 1   LVAHEAGDK-VATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDST 59
           L AH+A D  +A  LALR EI LIDFTGSSANG+WLE  A QA+V TEKSG+NQI+IDST
Sbjct: 264 LAAHDASDTGLARTLALRHEIGLIDFTGSSANGDWLEERARQARVLTEKSGINQIIIDST 323

Query: 60  ADFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTG 119
            +  GM +NIA SL LYSGQMCTTPQNIYIP+DG+ T +G +SF  V  AI +A++ LT 
Sbjct: 324 DNLAGMVQNIALSLALYSGQMCTTPQNIYIPRDGVRTPQGQLSFVEVSQAIVQAVAHLTT 383

Query: 120 DPVKAVELLGAIQNTAVLDRIEAARKMGEVVLDSMPLQHPQFPEARIRTPLLVKTAGGKA 179
           D  KAVELLGAIQN AVL RIE AR  G+V+L+S  L HPQFP AR+RTPL++     +A
Sbjct: 384 DSAKAVELLGAIQNEAVLQRIELARGKGQVLLESTALVHPQFPGARVRTPLVMLARRNEA 443

Query: 180 VTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAGVA 239
           +TEE+FGPISF V  D TA +I LA++   + GALTLSAYTTDA +++ L  AAA+AGVA
Sbjct: 444 ITEEYFGPISFIVPVDDTATAIALAQRIATDQGALTLSAYTTDATLRQGLQHAAADAGVA 503

Query: 240 LSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTREPV 291
           LSLNLTGGV VNQSAAFSD+HGTGANPAAN  L D  FVA R+RVVQTREPV
Sbjct: 504 LSLNLTGGVLVNQSAAFSDYHGTGANPAANCTLTDADFVAARYRVVQTREPV 555


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 751,950
Number of extensions: 27138
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)