BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0115.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313416|ref|YP_003777508.1| NAD-dependent aldehyde dehydrog...   218   3e-58

>gi|300313416|ref|YP_003777508.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 561

 Score =  218 bits (555), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 140/175 (80%), Gaps = 2/175 (1%)

Query: 1   MSTTFFERHRATLDKAVQAIGERGYWSPYSESPSPRVYGETAADDGKAAYDARLNRPFEI 60
           M T FF RHRATL++AV A+ +RGYWSPY+ESPSPR YGE AA+ G+AAY+ARL RPF  
Sbjct: 1   MPTDFFNRHRATLEQAVSALQQRGYWSPYNESPSPRFYGEGAAEAGRAAYEARLERPFLF 60

Query: 61  --DQAGTTGRIGSEVSPYGPALGITYPKADIDQLLQGVAAAGVAWRKAGPEVWAGVALEI 118
             +QAG    +G+EVSPYGP LGI YP  D+D+LL  +  A  +WR+AGP+VWAGVALEI
Sbjct: 61  TPEQAGGDRWVGAEVSPYGPPLGIRYPAPDLDRLLPSMQRAAASWREAGPQVWAGVALEI 120

Query: 119 VARLNARSFEIAHAVMHTTGQAYMMSFQAGGPHAQDRAVEAIAYAWQEXRHRPGD 173
           V RLNARSFEIAHAV HTTGQA+ M+FQAGGPHAQDRA+EAIA AWQ+ +  P +
Sbjct: 121 VQRLNARSFEIAHAVQHTTGQAFTMAFQAGGPHAQDRALEAIACAWQQLQLIPAE 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 757,249
Number of extensions: 33184
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)