BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0110.p
         (329 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313411|ref|YP_003777503.1| phenylacetic acid degradation p...   623   e-180

>gi|300313411|ref|YP_003777503.1| phenylacetic acid degradation
           protein [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  623 bits (1606), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 288/328 (87%), Positives = 311/328 (94%)

Query: 1   MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60
           MYAQ+VETGL  VR  D+MS EERAFQARI+ GVKIEPKDWMP+AYRKTL+RQ+SQHAHS
Sbjct: 1   MYAQMVETGLSKVRGLDDMSPEERAFQARIEAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60

Query: 61  EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120
           EIVGQLPE NWVTRAPTL+RKA+L+AKIQDEAGHGLYLYSAAETLGV+RD LL +LH+G+
Sbjct: 61  EIVGQLPEGNWVTRAPTLQRKAILMAKIQDEAGHGLYLYSAAETLGVSRDDLLDELHAGR 120

Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180
           AKYSSIFNYP LSWADMGAIGWLVDGSAIINQIPLCRCSYGPY+RAMVRVCKEESFHARQ
Sbjct: 121 AKYSSIFNYPALSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180

Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240
           GYDIM++LC+GTPEQKQMAQDALNRWWWP+LMMFGPSDA SVNSAQS QWRIKLFSNDEL
Sbjct: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240

Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300
           RQRMVDQT+PQ EYLGLTVPDPDLKWNEE GRYDFGAI+W+EFHNVLRGNGPCNRERL T
Sbjct: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGAINWDEFHNVLRGNGPCNRERLAT 300

Query: 301 RKKAYDDGAWFRDALVAHADKKQTAQAA 328
           RKKAYDDGAWFRDALVAHADK+ T +AA
Sbjct: 301 RKKAYDDGAWFRDALVAHADKRATRKAA 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,552
Number of extensions: 44972
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,212,660
Effective search space: 294676380
Effective search space used: 294676380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)