BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0109.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313410|ref|YP_003777502.1| carbonic anhydrase/acetyltransf...   346   7e-97
gi|300311056|ref|YP_003775148.1| carbonic anhydrase/acetyltransf...   109   2e-25
gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily ca...    63   2e-11

>gi|300313410|ref|YP_003777502.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 200

 Score =  346 bits (888), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 162/199 (81%), Positives = 182/199 (91%)

Query: 1   MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYIGPAACLRGDFGRIVIHRGANVQD 60
           MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCY+GP ACLRGDFGRIV+ RGANVQD
Sbjct: 1   MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYVGPTACLRGDFGRIVLQRGANVQD 60

Query: 61  TCVVHGFPAHDTVIEENGHIGHGAVLHSCIVRRDALVGMNAVVMDDAEVGEEAIVAASAF 120
           TCV+HGFP HDTV+EENGHIGHGAVLHSC VRRDALVGMNAVVMD+A VGE+AIVAA AF
Sbjct: 61  TCVIHGFPGHDTVVEENGHIGHGAVLHSCTVRRDALVGMNAVVMDEAVVGEQAIVAACAF 120

Query: 121 IRAGMKVPPRSLAAGVPAKILRELTEQEIAWKREGTHTYQDLTKRCLASMKEVQPLQEIE 180
           +RAGM++PPR+LAAG+PAK++RELT  E+AWK+ GT TYQDLT RCLAS++EV PL +IE
Sbjct: 121 VRAGMQIPPRTLAAGLPAKVVRELTADEMAWKQAGTRTYQDLTVRCLASLREVSPLSQIE 180

Query: 181 ADRPKLKAPAVEPLIAAKR 199
            +RP L AP VEPLIAA+R
Sbjct: 181 ENRPALAAPFVEPLIAARR 199


>gi|300311056|ref|YP_003775148.1| carbonic
           anhydrase/acetyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 174

 Score =  109 bits (272), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 97/173 (56%)

Query: 1   MPCYSIEGVIPVVDPSAYVHPTAVLIGDVIVGPDCYIGPAACLRGDFGRIVIHRGANVQD 60
           M  Y +E  IP +  +A+V  ++ ++G V +     +     +RGD   I I   +NVQ+
Sbjct: 1   MAIYQLEQDIPEIHDTAFVAESSTVVGKVKMEAHSSVWFNVAIRGDNELITIGENSNVQE 60

Query: 61  TCVVHGFPAHDTVIEENGHIGHGAVLHSCIVRRDALVGMNAVVMDDAEVGEEAIVAASAF 120
             V+H    +  VI +N  +GH A+LH C +   AL+G+ AVV++ A++G+  +V A A 
Sbjct: 61  GAVLHTDVGYPMVIGKNVTVGHQAMLHGCTIGEGALIGIQAVVLNGAKIGKNCLVGAGAL 120

Query: 121 IRAGMKVPPRSLAAGVPAKILRELTEQEIAWKREGTHTYQDLTKRCLASMKEV 173
           +  G + P  SL  G PAK +R+L+E++IA  R GT +Y    ++  A +K +
Sbjct: 121 VTEGKEFPDNSLIIGAPAKAVRQLSEEDIARMRAGTDSYVQRAQQFKAKLKRI 173


>gi|300312547|ref|YP_003776639.1| isoleucine patch superfamily
           carbonic anhydrase/acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 10/127 (7%)

Query: 11  PVVDPSAYVHPTAVLIGDVIVGPDCYIGPAACLR-------GDFGRIVIHRGANVQDTCV 63
           P V  SAYV  TA+L G VIV  + +IGP A +R       G+   I+I   +N+QD  V
Sbjct: 11  PQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVDEHGEMEPIIIGAHSNIQDGVV 70

Query: 64  VHGFPAHDTVIEENGHIGHGAVLHS-CIVRRDALVGMNAVVMDDAEVGEEAIVAASAFIR 122
           +H        I E   I H A++H  C V  DA +G N+V+  +  +G   +V  +A + 
Sbjct: 71  IHSKSGAAVTIGERTSIAHRAIVHGPCTVGDDAFIGFNSVLF-NCSIGAGCVVRHNAVVD 129

Query: 123 AGMKVPP 129
            G  +PP
Sbjct: 130 -GCDLPP 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 684,568
Number of extensions: 29055
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)