BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0101.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 148 3e-37 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 146 1e-36 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 145 2e-36 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 143 1e-35 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 140 8e-35 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 148 bits (374), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/133 (60%), Positives = 108/133 (81%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L+ AVS+A+RVA GDL++++ G+DE LL AL++MN SL+ IVG+VR GT+ I+ AS Sbjct: 219 LEEAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTAS 278 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 +IASGN +LS+RTE QASSLE+TAS+ME+LT+TV QNAD+A +ANQ+ +AS A +GG Sbjct: 279 TEIASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGG 338 Query: 121 QVVSQVLDTMGSI 133 VV+QV+DTMGSI Sbjct: 339 AVVNQVVDTMGSI 351 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 146 bits (369), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 138/252 (54%), Gaps = 63/252 (25%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L AV +ARRVA+GDL++++ V RDE LLGAL+ MN+SL++IV VR GT +I+ AS Sbjct: 221 LALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATAS 280 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATV---TQNADHAVRA------------ 105 +IA+GN +LS+RTE QASSLE+TASSME+LT+TV T NA A R Sbjct: 281 SEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGG 340 Query: 106 ---------------------------------------NQIVEAAS------GFAVKGG 120 N VEAA GFAV Sbjct: 341 GVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 400 Query: 121 QVVSQVLDTMGS---IXTLIDDSVQKVQSGNALAGQAGGTMKEIVDSVQHVERIISEITQ 177 +V S + + I LI DSV KV+SG+ L +AG TM+EIV+SVQ V +I+EI+ Sbjct: 401 EVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISA 460 Query: 178 AGREQSSGIGEI 189 AG EQ SGI ++ Sbjct: 461 AGEEQRSGIEQV 472 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/254 (40%), Positives = 137/254 (53%), Gaps = 63/254 (24%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 LQ AV IARRVA GDL +++ V+ +DE L+ AL MN+ L K+VG+VRSGT I+ AS Sbjct: 220 LQDAVDIARRVAEGDLGAQIQVQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATAS 279 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRA--------------- 105 +IA+GN +LS RTE QA++LE+TAS++E+LT+TV QN D+A +A Sbjct: 280 TEIATGNLDLSRRTEQQATALEETASALEELTSTVKQNTDNARQANQLAMAASGVAARGG 339 Query: 106 -----------------NQIVEAAS----------------------------GFAVKGG 120 N+IVE S GFAV Sbjct: 340 GVVGQVVETMEAINEASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 399 Query: 121 QVVSQVLDTMGS---IXTLIDDSVQKVQSGNALAGQAGGTMKEIVDSVQHVERIISEITQ 177 +V S + + I LIDDSV KV +G +L QAG TM E+V+SV+ V ++SEI+ Sbjct: 400 EVRSLAQRSASAAKEIKQLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISA 459 Query: 178 AGREQSSGIGEIXR 191 A EQS GI EI R Sbjct: 460 ASTEQSVGIDEINR 473 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 134/252 (53%), Gaps = 63/252 (25%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L AV +A VA GDL+S + GRDE S LL AL+ MN LL IV +VR T I+ AS Sbjct: 218 LDRAVRVAETVAAGDLTSAIDAHGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATAS 277 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKG- 119 +IA GN +LS+RTE QA+SLE+TASSMEQLTATV QNA HA +A+Q+ +AS A +G Sbjct: 278 SEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQASQLAGSASDIARQGG 337 Query: 120 ---GQVV----------SQVLDTMG----------------------------------- 131 G VV +++D +G Sbjct: 338 EVVGHVVETMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAA 397 Query: 132 --------------SIXTLIDDSVQKVQSGNALAGQAGGTMKEIVDSVQHVERIISEITQ 177 I LI DSV +V +G+ L QAG TM E+V SVQ V +++EI+ Sbjct: 398 EVRALAQRSATAAHEIKALIADSVARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISS 457 Query: 178 AGREQSSGIGEI 189 AG+EQS+GI ++ Sbjct: 458 AGQEQSAGIEQV 469 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 140 bits (353), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 78/133 (58%), Positives = 99/133 (74%) Query: 1 LQAAVSIARRVATGDLSSKVVVEGRDEVSDLLGALQAMNQSLLKIVGEVRSGTRVISDAS 60 L AV+IA VA GDL+S++ RDE LL AL+ MN +LL IVG VR GT I+ AS Sbjct: 216 LNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTAS 275 Query: 61 GQIASGNSELSARTEAQASSLEQTASSMEQLTATVTQNADHAVRANQIVEAASGFAVKGG 120 +IA+GN +LSARTEAQA SLE+TAS+MEQLT+TV QNAD+A +AN++ +AS A +GG Sbjct: 276 REIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGG 335 Query: 121 QVVSQVLDTMGSI 133 VV QV+ TMG+I Sbjct: 336 AVVDQVVATMGAI 348 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.124 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 537,946 Number of extensions: 17574 Number of successful extensions: 369 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 114 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)