BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0099.p (155 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 113 6e-27 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 112 2e-26 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 112 2e-26 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 105 2e-24 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 101 2e-23 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 113 bits (283), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 87/149 (58%) Query: 6 LDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLG 65 LD+ +IL LQ+N+ IS+ ELA ++ +S SP R K LE G I RY A+ D LG Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 66 LSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFL 125 L V + L R + +FE + EV+E Y TG DY+++++VPD+ F+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 126 HNVLVKLNGVSQVNTSVALREVKYETALP 154 + L K+ G+ + +S AL+++KY+TALP Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 112 bits (280), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 92/150 (61%) Query: 6 LDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLG 65 LD S+KILAELQ + RIS+ +LA +V +S + C R ++L++ GYI+ Y A ++ L Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 66 LSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFL 125 +S+ + L R V +F+++++ PE++EC+ G DY+VK V DM+AY +FL Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 126 HNVLVKLNGVSQVNTSVALREVKYETALPI 155 L++L GV + +T + EVK LPI Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 112 bits (279), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 88/143 (61%) Query: 13 ILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLGLSVCCLA 72 +L ELQ++ I+++ L +KV +S S RR + LE+ I RYTAV+D +GL V Sbjct: 13 LLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVGLGVTAFT 72 Query: 73 HISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFLHNVLVKL 132 ++L R E E FE+ + PEV EC+ TG DY+++++ PD+ A+ +F+ L++L Sbjct: 73 TVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFMMTRLLRL 132 Query: 133 NGVSQVNTSVALREVKYETALPI 155 GV+ V +++ L++VK LP+ Sbjct: 133 PGVTNVKSNITLKKVKQSHELPL 155 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 105 bits (262), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 84/150 (56%) Query: 6 LDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLG 65 LD +ILA LQK+ RIS EL E+VG+S +PC R + +E +G I Y A V+ LG Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 66 LSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFL 125 ++ I+L + + E+F + PEV EC+ +G DY++K + M Y L Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 126 HNVLVKLNGVSQVNTSVALREVKYETALPI 155 ++L++L G +Q + V + E+K ALP+ Sbjct: 131 GDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 101 bits (252), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 79/143 (55%) Query: 6 LDSASQKILAELQKNARISSNELAEKVGMSASPCWRRQKELEDNGYIVRYTAVVDRRKLG 65 LD ++IL LQK+ RI + ELA+K+GMSA+ CW K L + GY+ A++D KLG Sbjct: 3 LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKLG 62 Query: 66 LSVCCLAHISLLRHAEGVVEKFEETMRMRPEVIECYETTGTADYMVKVIVPDMDAYHDFL 125 L V + L R +FE+ +R V EC G DY +K+ V D+ A++ Sbjct: 63 LPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122 Query: 126 HNVLVKLNGVSQVNTSVALREVK 148 N L++L GV Q+ + L EVK Sbjct: 123 ANTLLRLPGVRQLRSFFVLNEVK 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 417,605 Number of extensions: 14807 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 9 Length of query: 155 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,250,540 Effective search space: 96291580 Effective search space used: 96291580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)