BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0098.p (595 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 524 e-150 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 497 e-141 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 524 bits (1350), Expect = e-150, Method: Compositional matrix adjust. Identities = 272/539 (50%), Positives = 353/539 (65%), Gaps = 22/539 (4%) Query: 49 TRSSGRVFLTGTQALVRLLCMQKIADAANGLNTGGFISGYRGSPLGAVDQELWRASKLLS 108 T GRVF+TG QALVRL +Q+ D GLNT GFI+GYRGSPLGAVDQ +A K L Sbjct: 23 TLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKYLE 82 Query: 109 AHNVEFLPAINEELGATAVLGSQQVEADPTRKVQGVFAMWYGKGPGVDRSGDALKHGNAY 168 A ++F P +NE+L AT+V G+QQV + GVF++WYGKGPGVDR GD KH N Sbjct: 83 AKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHANMA 142 Query: 169 GSSPHGGVLAILGDDHGCVSSSMPHQSEQALIAWGMPVVNPANIQEYMEFGLYGWALSRF 228 G+S HGGVL I GDDH SS+ HQSE L A G+PV+ P+++QEY+++GL+GWA+SR+ Sbjct: 143 GTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMSRY 202 Query: 229 SGAWVGFKAISETVEGGAVVEL-PSLPSYTVPTDYTPPADGLHNRWPDLPGLALEQR-VD 286 +G WV K +++ VE G V + P +P D+ P DGL+ R PD L E R ++ Sbjct: 203 TGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTV-LGQEARMIN 261 Query: 287 DKLKAVQAFAGVNSIDKLIVPAPGARIGIISAGKAYLDLLEALERLDLSQQQLEDLGVRL 346 K A A+A N ++++I +P ARIGII+AGK+YLD +ALE L + +Q D+G+RL Sbjct: 262 YKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDIGIRL 321 Query: 347 YKPGLTYPLERTRLSAFAQGLDEILVVEEKGAVIEQQLKNLFYNLPQERRPSVIGKTD-- 404 YK G+T+PLE + FAQGLDEILVVEEK ++E QLK YN + RP V+GK D Sbjct: 322 YKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKFDDT 381 Query: 405 ---------AHGEALLSALGELRPSRIAPALV----RWFGPRFPTLNLQRFLPDFCAAEL 451 HG LL A EL P++IA A+ R+F ++ + A E Sbjct: 382 GEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLEAKEA 441 Query: 452 ---LSNGADSVK-RTPYFCSGCPHNTSTRVPEGSRAMAGIGCHFMATWMKRDTNYLAQMG 507 +S+ D K R P+FCSGCPHNTST++PEGSR +AGIGCH+M TWM R+T MG Sbjct: 442 TLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRETKLFTHMG 501 Query: 508 GEGINWVGSSRFVEEKHVFQNLGDGTYYHSGSLAIRQAIAARTNITYKILYNXARGCSG 566 GEG+ WVG + F +EKHVF NLGDGTY+HSG LA+R ++AA+ NITYKILYN A +G Sbjct: 502 GEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAMTG 560 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/540 (48%), Positives = 357/540 (66%), Gaps = 17/540 (3%) Query: 43 ALEDNLTRSSGRVFLTGTQALVRLLCMQKIADAANGLNTGGFISGYRGSPLGAVDQELWR 102 +L+D T ++G ++L+G QALVRL +Q+I D A GLNT GFISGYRGSPLG +D+ LW Sbjct: 18 SLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDEALWH 77 Query: 103 ASKLLSAHNVEFLPAINEELGATAVLGSQQVEADPTRKVQGVFAMWYGKGPGVDRSGDAL 162 A L+AH V+F P +NE++ ATAV G+QQV+ GV+AMWYGKGPGVDR GD L Sbjct: 78 AQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRCGDVL 137 Query: 163 KHGNAYGSSPHGGVLAILGDDHGCVSSSMPHQSEQALIAWGMPVVNPANIQEYMEFGLYG 222 KH N G+S HGGVL + GDDHG SS++PHQS+ A +P++ P N+QEY++ GL+G Sbjct: 138 KHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHG 197 Query: 223 WALSRFSGAWVGFKAISETVEGGAVVEL-PSLPSYTVPTDYTPPADGLHNRWP-DLPGLA 280 WA+SR+SG VGFKA+++TVE A V+ P +P+D+ P GL+ R D G+ Sbjct: 198 WAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDTLGVQ 257 Query: 281 LEQR----VDDKLKAVQAFAGVNSIDKLIVPAPGARIGIISAGKAYLDLLEALERLDLSQ 336 ++ D K+ A A+A N ++++++ +P AR+GII++GK+YLD+LEAL L + + Sbjct: 258 ARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSELGIDE 317 Query: 337 QQLEDLGVRLYKPGLTYPLERTRLSAFAQGLDEILVVEEKGAVIEQQLKNLFYNLPQERR 396 ++G+RL+K + +PLE + FAQGLDEILVVEEK ++E QLK YN + R Sbjct: 318 AFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVR 377 Query: 397 PSVIGKTDA-------HGEALLSALGELRPSRIAPALVRWFGPRFPTLNLQRFLPDFCAA 449 P VIGK D GE LL++ + ++IA + RF T +L + F A Sbjct: 378 PRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIA-RFHTSDLIKARLAFLDA 436 Query: 450 E--LLSNGADSVKRTPYFCSGCPHNTSTRVPEGSRAMAGIGCHFMATWMKRDTNYL-AQM 506 + +LS ++ R Y+CSGCPHN+STRVPEGS A+AGIGCH MAT + + N L M Sbjct: 437 KDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGIGCHVMATAIYPEFNKLTTHM 496 Query: 507 GGEGINWVGSSRFVEEKHVFQNLGDGTYYHSGSLAIRQAIAARTNITYKILYNXARGCSG 566 GGEG W+G + F + HVF NLGDGTY+HSG LAIR A+AA+ N+TYKILYN A +G Sbjct: 497 GGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNMTYKILYNDAVAMTG 556 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,909,829 Number of extensions: 85047 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 2 Length of query: 595 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 504 Effective length of database: 1,188,985 Effective search space: 599248440 Effective search space used: 599248440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)