BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0096.p (538 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 496 e-141 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 474 e-135 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 496 bits (1276), Expect = e-141, Method: Compositional matrix adjust. Identities = 264/521 (50%), Positives = 336/521 (64%), Gaps = 13/521 (2%) Query: 2 MINPAVCEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLGG 61 +IN AVCEGCGDC VQSNCLS+ PLETE GRKRQI QSSCNKDYSCV GFCPSFV+V GG Sbjct: 656 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 715 Query: 62 TLKKPESVKLTLADLEATLAAYPTPAPHRFAKPFEILVAGVGGTGVVTVGALITMAAHLE 121 LKKP + AD+ L + P P A+P+ ILV GVGGTGV+T+G +I MAAH+E Sbjct: 716 QLKKPARAQ---ADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVE 772 Query: 122 GKGASTLDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQADAVFACDLVVSAMQEGLS 181 G+ S LD G AQKGG V+SHVR+A A ++ R+ AD V CD++V+A ++ LS Sbjct: 773 GRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALS 832 Query: 182 VMRRGHTKVIANDREIPTADFTRDPDASINKDGLLEKLAASAGADNVVQIDAQATALRFL 241 M G T N ++PTA F R+PD ++A + G DN+ +DA A + Sbjct: 833 RMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALM 892 Query: 242 GDPIGGNILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMNKRAFTLGRLAAADAA-ALD 300 GD I N+ ++GYAWQ+G VP+ AL+RAIELN + ++ NK+AF GR AA D A L Sbjct: 893 GDAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLA 952 Query: 301 KLGKP--KQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYEEAVAAVERAEASLEGN 358 G+ QVI+F +L + V R+ FLT Y N AYAR Y + V V E++L G Sbjct: 953 AAGRNGMSAQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESAL-GE 1011 Query: 359 ASR-RPISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQFDGDYKLAFHLAPPMLA 417 A R +S+ VA LFKLMAYKDEYEVARLHADP FR ++A F+GDYKL FHLAPP+LA Sbjct: 1012 AGRGLKLSRAVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLA 1071 Query: 418 RKKPGSDVPAKIRFGALMMSGFAVLSRFKSMRGTPLDVFGYTEERRRERALRDRYLNFVL 477 ++ + K FG+ MM F VL+R + +RGT LD F YTEERR+ERAL Y + Sbjct: 1072 KRDDKGHL-RKQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLS 1130 Query: 478 ALADQLNAGNKGAALKLAQLPEQVRGYGHVK----LAAMDK 514 L D+L N +A++PE++RGYGHVK AAM+K Sbjct: 1131 RLLDRLTPENLEQITAVARIPEEIRGYGHVKERHLKAAMEK 1171 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 474 bits (1220), Expect = e-135, Method: Compositional matrix adjust. Identities = 262/536 (48%), Positives = 343/536 (63%), Gaps = 10/536 (1%) Query: 1 MMINPAVCEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLG 60 + IN AVCEGCGDCGVQSNC SILPLET+LGRKR I+QSSCNKDYSCV+GFCPSFV+V G Sbjct: 651 LFINAAVCEGCGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTG 710 Query: 61 GTLKKPESVKLTLADLEATLAAYPTPAPHRFAKPFEILVAGVGGTGVVTVGALITMAAHL 120 G L+K + ++ + P P PF IL+ G+GGTGV+T+GAL+ MAAHL Sbjct: 711 GKLRKSRT-GVSRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHL 769 Query: 121 EGKGASTLDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQADAVFACDLVVSAMQEGL 180 EGKGAS LD G +QK G+V SHVRIAA A+ RI +AD V CD++ + + + Sbjct: 770 EGKGASVLDMTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAI 829 Query: 181 SVMRRGHTKVIANDREIPTADFTRDPDASINKDGLLEKLAASAGADNVVQIDAQATALRF 240 S MR G T+ + N + P F R+PD + + + S G IDA A Sbjct: 830 SKMRPGRTRAVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQQADF-IDATRLATAL 888 Query: 241 LGDPIGGNILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMNKRAFTLGRLAAADAAALD 300 +GD I N+ ++GYAWQRG +P+ +L+RAIELNGVA+ NK AF GR AA D A ++ Sbjct: 889 MGDSIATNLFMLGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVE 948 Query: 301 KLGKPKQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYEEAVAAVERAEASLEGNAS 360 ++ P Q V+ P+SL + R+ LT YQ+ AYA ++ E V AV AEA+L + Sbjct: 949 QIAVPAQPVL-LHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSDK- 1006 Query: 361 RRPISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQFDGDYKLAFHLAPPMLARKK 420 ++ VARNL +LMAYKDEYEVARL+ + F++++A QF+GD+ L+FHLAPP+LARK Sbjct: 1007 ---LATAVARNLSRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKD 1063 Query: 421 PGSDVPAKIRFGALMMSGFAVLSRFKSMRGTPLDVFGYTEERRRERALRDRYLNFVLALA 480 G K R+G +M F +L+R K +RG LD+FG+TEERR ER L +Y VL L Sbjct: 1064 -GQGHLLKARYGGWVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLL 1122 Query: 481 DQLNAGNKGAALKLAQLPEQVRGYGHVKLAAMDKADREWDGLMGEF--LGESRGDE 534 +L A N A++LAQLPEQVRGYGHVKL A+ L+ F G+SR +E Sbjct: 1123 PRLTAANLATAIELAQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQAGQSRLEE 1178 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,459,348 Number of extensions: 53907 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 2 Length of query: 538 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 448 Effective length of database: 1,193,720 Effective search space: 534786560 Effective search space used: 534786560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)