BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0094.p (591 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 566 e-162 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 542 e-155 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 566 bits (1458), Expect = e-162, Method: Compositional matrix adjust. Identities = 297/575 (51%), Positives = 378/575 (65%), Gaps = 18/575 (3%) Query: 1 VHHRTELDVIQRMLRDIPGVTVLVYDQTCAAEKRRRRKKNKPGHVAFPDPARRMMINPAV 60 + HR+ELD +QR LR+ PGV+ ++YDQTCA+EKRRRRK+N A+PDPA+R +IN AV Sbjct: 607 IRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRN-----AYPDPAKRAVINEAV 661 Query: 61 CEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLGGTLKKPE 120 CEGCGDC VQSNCLS+ PLETE GRKRQI QSSCNKDYSCV GFCPSFV+V GG LKKP Sbjct: 662 CEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPA 721 Query: 121 SVKLTLADLEATLAAYPTPAPHRFAKPFEILVAGVGGTGVVTVGALITMAAHLEGKGAST 180 + AD+ L + P P A+P+ ILV GVGGTGV+T+G +I MAAH+EG+ S Sbjct: 722 RAQ---ADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSV 778 Query: 181 LDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQADAVFACDLVVSAMQEGLSVMRRGH 240 LD G AQKGG V+SHVR+A A ++ R+ AD V CD++V+A ++ LS M G Sbjct: 779 LDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGR 838 Query: 241 TKVIANDREIPTADFTRDPDASINKDGLLEKLAASAGADNVVQIDAQATALRFLGDPIGG 300 T N ++PTA F R+PD ++A + G DN+ +DA A +GD I Sbjct: 839 THAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIAT 898 Query: 301 NILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMNKRAFTLGRLAAADAA-ALDKLGKP- 358 N+ ++GYAWQ+G VP+ AL+RAIELN + ++ NK+AF GR AA D A L G+ Sbjct: 899 NMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNG 958 Query: 359 -KQQVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYEEAVAAVERAEASLEGNASR-RP 416 QVI+F +L + V R+ FLT Y N AYAR Y + V V RA S G A R Sbjct: 959 MSAQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQV-RARESALGEAGRGLK 1017 Query: 417 ISKMVARNLFKLMAYKDEYEVARLHADPVFREQVAAQFDGDYKLAFHLAPPMLARKKPGS 476 +S+ VA LFKLMAYKDEYEVARLHADP FR ++A F+GDYKL FHLAPP+LA++ Sbjct: 1018 LSRAVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKG 1077 Query: 477 DVPAKIRFGALMMSGFAVLSRFKSMRGTPLDVFGYTEERRRERALRDRYLNFVLALADQL 536 + K FG+ MM F VL+R + +RGT LD F YTEERR+ERAL Y + L D+L Sbjct: 1078 HL-RKQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRL 1136 Query: 537 NAGNKGAALKLAQLPEQVRGYGHVK----LAAMDK 567 N +A++PE++RGYGHVK AAM+K Sbjct: 1137 TPENLEQITAVARIPEEIRGYGHVKERHLKAAMEK 1171 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 542 bits (1396), Expect = e-155, Method: Compositional matrix adjust. Identities = 294/589 (49%), Positives = 384/589 (65%), Gaps = 15/589 (2%) Query: 1 VHHRTELDVIQRMLRDIPGVTVLVYDQTCAAEKRRRRKKNKPGHVAFPDPARRMMINPAV 60 VH R ++D +QR LR++PGVTV++YDQTCAAEKRRRRKK +PDP +R+ IN AV Sbjct: 603 VHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGD-----YPDPNQRLFINAAV 657 Query: 61 CEGCGDCGVQSNCLSILPLETELGRKRQIEQSSCNKDYSCVEGFCPSFVSVLGGTLKKPE 120 CEGCGDCGVQSNC SILPLET+LGRKR I+QSSCNKDYSCV+GFCPSFV+V GG L+K Sbjct: 658 CEGCGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSR 717 Query: 121 SVKLTLADLEATLAAYPTPAPHRFAKPFEILVAGVGGTGVVTVGALITMAAHLEGKGAST 180 + ++ + P P PF IL+ G+GGTGV+T+GAL+ MAAHLEGKGAS Sbjct: 718 T-GVSRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASV 776 Query: 181 LDFMGFAQKGGAVLSHVRIAASPAALNQVRIDLQQADAVFACDLVVSAMQEGLSVMRRGH 240 LD G +QK G+V SHVRIAA A+ RI +AD V CD++ + + +S MR G Sbjct: 777 LDMTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGR 836 Query: 241 TKVIANDREIPTADFTRDPDASINKDGLLEKLAASAGADNVVQIDAQATALRFLGDPIGG 300 T+ + N + P F R+PD + + + S G IDA A +GD I Sbjct: 837 TRAVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQQADF-IDATRLATALMGDSIAT 895 Query: 301 NILLMGYAWQRGLVPVGLPALMRAIELNGVAIDMNKRAFTLGRLAAADAAALDKLGKPKQ 360 N+ ++GYAWQRG +P+ +L+RAIELNGVA+ NK AF GR AA D A ++++ P Q Sbjct: 896 NLFMLGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQ 955 Query: 361 QVIQFAAPKSLADTVAFRIDFLTKYQNCAYARRYEEAVAAVERAEASLEGNASRRPISKM 420 V+ P+SL + R+ LT YQ+ AYA ++ E V AV AEA+L + ++ Sbjct: 956 PVL-LHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSDK----LATA 1010 Query: 421 VARNLFKLMAYKDEYEVARLHADPVFREQVAAQFDGDYKLAFHLAPPMLARKKPGSDVPA 480 VARNL +LMAYKDEYEVARL+ + F++++A QF+GD+ L+FHLAPP+LARK G Sbjct: 1011 VARNLSRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKD-GQGHLL 1069 Query: 481 KIRFGALMMSGFAVLSRFKSMRGTPLDVFGYTEERRRERALRDRYLNFVLALADQLNAGN 540 K R+G +M F +L+R K +RG LD+FG+TEERR ER L +Y VL L +L A N Sbjct: 1070 KARYGGWVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAAN 1129 Query: 541 KGAALKLAQLPEQVRGYGHVKLAAMDKADREWDGLMGEF--LGESRGDE 587 A++LAQLPEQVRGYGHVKL A+ L+ F G+SR +E Sbjct: 1130 LATAIELAQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQAGQSRLEE 1178 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,603,185 Number of extensions: 59365 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 2 Length of query: 591 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 500 Effective length of database: 1,188,985 Effective search space: 594492500 Effective search space used: 594492500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)