BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0087.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase [H...   422   e-120
gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase [Herbaspir...   161   4e-41
gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase [H...    63   2e-11

>gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  422 bits (1086), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/232 (85%), Positives = 222/232 (95%)

Query: 1   VADIETFKQENRVFAPPAEFVKNAAVSGMDAYNALCAEAERDYEGFWARLARENLQWNKP 60
           +ADIETFKQENRVFAPPAE VK+AA+SGMDAY+AL AE  +DYEG WARLA++NL+W+KP
Sbjct: 1   MADIETFKQENRVFAPPAELVKHAAISGMDAYHALNAEFAKDYEGTWARLAKDNLKWHKP 60

Query: 61  FTKTLNEADAPFYKWFEDGKINVSYNCLDVNLDNGNADKTAVIFESDDAKVTRVTYRELH 120
           FT+TL+E++APFYKWF DG++NVSYNCLDVNL+NGNADKTAVIFESDD KVTRV+YRELH
Sbjct: 61  FTQTLDESNAPFYKWFADGQVNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELH 120

Query: 121 KKVCHFANGLKSLGVKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLQER 180
           +KVC FANGLKSLG+KKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSL ER
Sbjct: 121 QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER 180

Query: 181 VIDAGAVAVITADYQVRGGKQLPLKSIVDEALAMGGCDTIRNVVVYKRAGAD 232
           VIDAGAVAV+TADYQVRGGKQLPLKSIVDEAL MGGCDT+++VVVYKRAGA+
Sbjct: 181 VIDAGAVAVLTADYQVRGGKQLPLKSIVDEALDMGGCDTLKHVVVYKRAGAE 232


>gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  161 bits (408), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 32  YNALCAEAERDYEGFWARLARENLQWNKPFTKTLNEADAPFYKWFEDGKINVSYNCLDVN 91
           Y     ++    E FWA+ A + + W +PF++TL+ +  PF +WF DG+ N+ +N +D +
Sbjct: 3   YEQFYRQSVEQPEAFWAQEA-QRIHWQQPFSRTLDYSRPPFARWFIDGQTNLCHNAVDRH 61

Query: 92  LDNGNADKTAVIFESDDAKVTRV-TYRELHKKVCHFANGLKSLGVKKGDRVVIYMPMSVE 150
           L    A + A+I  S +    RV TY EL ++V   A  +++LGV++GDRV+IYMPM  E
Sbjct: 62  LPE-RAQQAALIAISTETNSERVYTYAELQQEVMAMAASMQALGVQRGDRVLIYMPMIAE 120

Query: 151 GVAAMQACARIGATHSVVFGGFSAKSLQERVIDAGAVAVITADYQVRGGKQLPLKSIVDE 210
            V AM ACARIGA HSVVFGGF++ SL  R+ DA    +++AD   RGGK +P K ++DE
Sbjct: 121 AVFAMLACARIGAVHSVVFGGFASNSLASRIDDAQPRLIVSADAGSRGGKVIPYKGLLDE 180

Query: 211 ALAM 214
           A+AM
Sbjct: 181 AIAM 184


>gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 549

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 73  YKWFEDGKINVSYNCLDVNLDNGNADKTAVIFESDDAKVTRVTYRELHKKVCHFANGLKS 132
           Y+W      N++    D   D     +TA+I E  D  VT  +Y +L      FAN L++
Sbjct: 24  YEWQIPTHFNIAQAACDRWADGSG--RTAIICEDADGSVTSYSYDQLKILSDRFANALRA 81

Query: 133 LGVKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLQERVIDAGAVAVIT 191
            GV +GDR+ IY+   +E V    A  ++GA    +F  F   ++  R+ ++GAVA++T
Sbjct: 82  AGVGRGDRIGIYLSQRIETVITHLAAYKLGAITVPLFYLFGPDAIAYRLDNSGAVALVT 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 714,912
Number of extensions: 28539
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)