BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0084.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspiril...   601   e-173

>gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 513

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/312 (93%), Positives = 303/312 (97%)

Query: 1   MLMAKEVLMDDIDMYELKQRGPQNKTEELRIELCDKVNALGIGAQGLGGLTTVLDVKIAM 60
           MLMAKEVLM+DIDMYEL +RGPQNKTEELRIEL +KVNALGIGAQGLGGLTTVLDVKI M
Sbjct: 202 MLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNALGIGAQGLGGLTTVLDVKIMM 261

Query: 61  YPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMDPPSLSEWPEVHWVPDTEKSKSVNLD 120
           +PTHAASKPVAMIPNCAATRHGHFVLDGSGPAYM+PPSLS+WPEVHWV DTEKSK VNLD
Sbjct: 262 HPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSLSDWPEVHWVADTEKSKRVNLD 321

Query: 121 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDP 180
           TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAKGEKLPVDFTNRVIYYVGPVDP
Sbjct: 322 TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAKGEKLPVDFTNRVIYYVGPVDP 381

Query: 181 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPTAIEAIKKHKSAYLMAVGG 240
           VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGP AIEAIKKHKSAYLMAVGG
Sbjct: 382 VRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSERGPAAIEAIKKHKSAYLMAVGG 441

Query: 241 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDSNGISVHNTGPAEWKEKIAT 300
           SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVD+NG+SVHNTGPAEWKEKIA 
Sbjct: 442 SAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAVDANGVSVHNTGPAEWKEKIAQ 501

Query: 301 NTALSKIAVTTA 312
           + +LSKI VTTA
Sbjct: 502 SVSLSKIPVTTA 513


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 907,797
Number of extensions: 34181
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 130 (54.7 bits)