BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0083.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310872|ref|YP_003774964.1| glutamate racemase [Herbaspiril...   328   3e-91

>gi|300310872|ref|YP_003774964.1| glutamate racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  328 bits (842), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 181/277 (65%), Positives = 209/277 (75%), Gaps = 6/277 (2%)

Query: 8   ATPMPMPMDLHTHCDAPIGIFDSGIGGLSVLRHVRAALPQEHLLYFADSGYAPYGDKGEQ 67
           ++PMP      T  DA IGIFDSGIGGLSVLRH+ AALP+E LLYFADSGYAPYGDK E 
Sbjct: 19  SSPMP------TAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFADSGYAPYGDKTEA 72

Query: 68  QIVERSLAIAGFLIGQGIKALVVACNTATAAAIQAIRVQWPELIVVGIEPGLKPAALHSK 127
           QIVERSLAIA FL+ Q +KALVVACNTATAAAIQAIR +WP+L+VVGIEPGLKPAA  ++
Sbjct: 73  QIVERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGIEPGLKPAAQLTR 132

Query: 128 SGVVGVLATRSTLASARFIALREQIATVGKVQFISQACVGLVDQIEKGELQSPATAALVD 187
           S  VGVLATRSTLAS RF  L+ Q+    +V+++ QACVGLVD IEKGEL SPAT  L++
Sbjct: 133 SRTVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKGELHSPATVQLLE 192

Query: 188 RYVMPLIAQGADTLVLGCTHYPFARELIESAARHGGCAAPVIIDTGEAVTRQLSRLLEAK 247
           RY+ PL+ QGADTLVLGCTHYPF R  IES  +      P IIDTG+AVTRQL RLLEA 
Sbjct: 193 RYLAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQAVTRQLQRLLEAG 252

Query: 248 ALMRHTDGGNLLAYTTAGVSTLSTALTNLLKMEAEVR 284
            L      G+L  +TTA  STL  A   LLK++  V+
Sbjct: 253 QLQTGAASGSLAGFTTASRSTLENAFRGLLKLDPPVQ 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,303
Number of extensions: 32666
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)