BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0081.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar ep...    74   1e-14

>gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 17/226 (7%)

Query: 2   IVVTGATGQLGRLVIAALLKTVPAANIVAAVRSPEKAADLAALGVQVRRA--DYTDAASL 59
           I+VTGATG +G LV+  L      A + A VRSP K A    L   V+    D  +  SL
Sbjct: 3   ILVTGATGAVGSLVVQGLAAA--GAEVRALVRSPGKMA----LPADVKEVVGDLREVTSL 56

Query: 60  DAALQGAEKVLLISSSEIGSRLAQHRAVIDAAKRANVKLLAYTSVLRADSST--LGLAAE 117
             ALQG  + L + ++     L Q   V++ A +A ++ + Y SV+ AD  T       +
Sbjct: 57  RTALQGV-RTLFVLNAVAPDELTQALNVLNLAHQAGIERIVYLSVIHADRFTDVPHFTGK 115

Query: 118 HEQTEQAIKDSGVPATILRNGWYHENYTAGLPTAVANGAIVGSAGDGRISSAARSDYAEA 177
           H   E+ I+ SG+PATILR  ++ +N    LP   + G      G   +      D A+ 
Sbjct: 116 HT-VERMIEGSGLPATILRPAYFMQNDVPLLPVLSSYGVYPMPIGPSGVEMIDVRDIADI 174

Query: 178 AAAVLSGSGHAGK-----TYELAGDGAYTLSELAAEAARQSGKPVE 218
           A A L     A K     T +L G  ++T ++ AA  +    +P++
Sbjct: 175 AVAELLARDRADKPLPTRTLDLVGPQSFTGAQAAAVWSEVLQRPIQ 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,746
Number of extensions: 30073
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)