BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0078.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311524|ref|YP_003775616.1| hypothetical protein Hsero_2209...   460   e-131

>gi|300311524|ref|YP_003775616.1| hypothetical protein Hsero_2209
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  460 bits (1183), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/295 (74%), Positives = 246/295 (83%)

Query: 1   MAKIRIGISGWRYAPWRGGFYPEDLAQADELQFASRVLPSIELNGSFYALQRPQSYAAWY 60
           M KI IGISGWRYAPWRG FYP+ L Q DEL +ASRVLPSIELNGSFYALQRP+SY  WY
Sbjct: 1   MGKIWIGISGWRYAPWRGSFYPKGLRQDDELHYASRVLPSIELNGSFYALQRPESYQRWY 60

Query: 61  DATPPGFMFSIKGNRFITHIQRLRDIEGPLANVFASGVFNLKEKLGPFLWQFPPSFRYDA 120
           + TPPGF+FS KGNRFITH +RL+DI+G LANVFASGVFNLKEKLGPFLWQFPPSFRY+ 
Sbjct: 61  EQTPPGFLFSHKGNRFITHTRRLQDIDGALANVFASGVFNLKEKLGPFLWQFPPSFRYEP 120

Query: 121 ELVEHFLSLLPHDTEAALELAQQCEPRMKERSLLAIDKKRTMRHAMEIRHESFIDEGFIA 180
           E +EHFLSLLPHDTEAA+ LAQ  EPRM+ R  L +DKKR +RHAMEIRH+SF+DE FI 
Sbjct: 121 ESLEHFLSLLPHDTEAAMALAQGHEPRMQGRVALEVDKKRKLRHAMEIRHDSFVDESFIQ 180

Query: 181 LLRKYNVALVVADTAGKWPYLEDVTADFMYLRLHGDKELYASGYTKPALERWARRIEAWS 240
           LLRKY VALV+AD   KWPY EDVTADFMYLRLHGDK LY SGY+  A++ WA RI AW+
Sbjct: 181 LLRKYQVALVIADAPKKWPYQEDVTADFMYLRLHGDKRLYQSGYSDEAIDAWAERIRAWA 240

Query: 241 KGGQPKDAQCASASQPKARKSRDIYCYFDNDIKVKAPFDARRLIARLGLEKELAP 295
            GGQP+     SA+ P+ R SRD+YCYFDND+KVKAPFDARRLI RLGL+ EL P
Sbjct: 241 AGGQPEQGPRISAAAPRKRASRDVYCYFDNDMKVKAPFDARRLIERLGLKLELPP 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 993,330
Number of extensions: 41012
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)