BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0069.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309902|ref|YP_003773994.1| dithiol-disulfide isomerase inv...   100   1e-22

>gi|300309902|ref|YP_003773994.1| dithiol-disulfide isomerase
           involved in polyketide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 6/214 (2%)

Query: 5   LKIDFVSDVVCPWCAIGLAGLNTALERLGPETHVDFTVHPFELNPGMPAAGQEQLEHITE 64
           L+ID  +++ CPWC +G   L+  L     E   D   HP  L P  P  G    + +  
Sbjct: 2   LRIDLYTEITCPWCFVGQHRLDKVLRERFAELTADIHHHPVLLLPDAPVTGLYIPDLLRT 61

Query: 65  KYGISADQARINREQIRARAASVGFTMNRDDTSRVYNTFDAHRLLAWAKEKNAQAALKLI 124
           +YG++  ++  +R +  ARA+  GF ++       Y T  AH ++  A+E+  Q  L + 
Sbjct: 62  RYGVTDPKSAFSRPESEARAS--GFHLDLSRQRYAYPTQAAHAIILAARERRTQHQLAIA 119

Query: 125 LLEAYFTDGKNIADRNVLAELASQAGLDTVEASEILASDRFAQEVKEEETFWTQRGISSV 184
           + +AYF D KNI+D +VLA+LA+  G    EA  I       + ++++       G++SV
Sbjct: 120 ITDAYFIDAKNISDVDVLADLAADHGFSADEARAIALDPIQHKRIEQQAANSNAVGVNSV 179

Query: 185 PAVIVNDRYLISG----GQPPDVFEEQLRAILAG 214
           P  +      ++G    G+   V  + L A+  G
Sbjct: 180 PHFVFGSNSALNGACSEGEIAHVIGKTLHAVTGG 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,379
Number of extensions: 26193
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)