BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0066.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 195 2e-51 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 188 3e-49 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 187 7e-49 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 186 1e-48 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 185 3e-48 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 128/194 (65%), Gaps = 1/194 (0%) Query: 38 LQVLDDISLTVAPGEFVALLGPSGCGKSTLLRLVAGLEPATTGQVTQDDTKITRPDPSRI 97 + LD +SL + G FV LG SGCGKSTLL +AG P + G+++ D ++ P R Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERG 78 Query: 98 VVFQDPTLYPWRKVWDNVALGLQARGLLK-EQRHRVDDALALVGLTEFADAFPHQLSGGM 156 VVFQ +L PW+ V DNVALGL+ G+ K + R R + L LVGL +FA A P++LSGGM Sbjct: 79 VVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGM 138 Query: 157 AQRVALARALVNDPQLLVLDEPLGKLDSLTRLQMQSELVSLWQRNGFSALLVTHDVEEAL 216 QRV LARAL +P++L++DEP G LDS+TR QMQ LVS+W R G +TH +EEAL Sbjct: 139 RQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEAL 198 Query: 217 FLANRVIIFSDRPA 230 FL VI+ S RP Sbjct: 199 FLGTEVIVMSPRPG 212 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/211 (45%), Positives = 133/211 (63%), Gaps = 1/211 (0%) Query: 21 HIDIQHVSHWFKLPNGVLQVLDDISLTVAPGEFVALLGPSGCGKSTLLRLVAGLEPATTG 80 I IQ V FK + + L DI+L + G+FV LLGPSGCGKSTLL +AG ++G Sbjct: 9 RIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 81 QVTQDDTKITRPDPSRIVVFQDPTLYPWRKVWDNVALGLQARGLLKEQRH-RVDDALALV 139 Q+ DD ++ P P R +VFQ+ L+PW V NVA GL+ +G K + H RV L + Sbjct: 69 QILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKL 128 Query: 140 GLTEFADAFPHQLSGGMAQRVALARALVNDPQLLVLDEPLGKLDSLTRLQMQSELVSLWQ 199 GL +F FP LSGGM QRVA+AR L D ++++DEP G LD+LTR +Q EL+ +W Sbjct: 129 GLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWD 188 Query: 200 RNGFSALLVTHDVEEALFLANRVIIFSDRPA 230 + + VTH +EEA++LA+R+++ + RP Sbjct: 189 EFRKTIVFVTHSIEEAIYLADRIVVMTYRPG 219 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 187 bits (474), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 4/217 (1%) Query: 18 TGAHIDIQHVSHWFKLPNGVLQVLDDISLTVAPGEFVALLGPSGCGKSTLLRLVAGLEPA 77 G IDI V F GV L +I+LTVA GEFV L+G SGCGKSTLL L+AGL Sbjct: 7 NGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKP 66 Query: 78 TTGQVTQDDTKITRPDPSRIVVFQDPTLYPWRKVWDNVALGLQARGLLKEQRHRVDD--- 134 + G + + +I P P R VVFQ+ +L PW ++N+ LG++ E R ++ D Sbjct: 67 SEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRTR 126 Query: 135 -ALALVGLTEFADAFPHQLSGGMAQRVALARALVNDPQLLVLDEPLGKLDSLTRLQMQSE 193 ALALVGL+ + P+++SGGM QRV +ARAL +P++L++DEP G LD+LTR +Q E Sbjct: 127 AALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDE 186 Query: 194 LVSLWQRNGFSALLVTHDVEEALFLANRVIIFSDRPA 230 L+ + + + ++VTHDV+EA+ L++R+++ ++ PA Sbjct: 187 LLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPA 223 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 186 bits (472), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 97/198 (48%), Positives = 133/198 (67%), Gaps = 5/198 (2%) Query: 36 GVLQVLDDISLTVAPGEFVALLGPSGCGKSTLLRLVAGLEPATTGQVTQDDTKITRPDPS 95 G L V+++ + +A GE VAL+GPSGCGKSTLL + AGLE ++G V D I P P Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 96 RIVVFQDPTLYPWRKVWDNVALGLQARGLLKE---QRHRVDDALALVGLTEFADAFPHQL 152 R ++FQ+ LYPW + NVAL L+ + + K+ ++ RV L V L F +PHQ+ Sbjct: 73 RTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARV--WLENVKLKGFEHYYPHQV 130 Query: 153 SGGMAQRVALARALVNDPQLLVLDEPLGKLDSLTRLQMQSELVSLWQRNGFSALLVTHDV 212 SGGM QR ALARA ++ P+ L+LDEP G LD+LTR+ +Q L L ++ G + +LVTHDV Sbjct: 131 SGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHDV 190 Query: 213 EEALFLANRVIIFSDRPA 230 +EALFLA+R+ +FS RPA Sbjct: 191 DEALFLADRIFVFSPRPA 208 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 185 bits (469), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/230 (45%), Positives = 144/230 (62%), Gaps = 4/230 (1%) Query: 5 AIEQH--SQADAPAKTGAHIDIQHVSHWFKLPNGVLQV-LDDISLTVAPGEFVALLGPSG 61 AI QH + A A+ I++++VS F +G V L D S++VA GEFVA++GP+G Sbjct: 3 AINQHAFTPAGQAAQETPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTG 62 Query: 62 CGKSTLLRLVAGLEPATTGQVTQDDTKITRPDPSRIVVFQDPTLYPWRKVWDNVALGLQA 121 CGKST L L+ GL T G+V + DP VFQ+ ++PWR V +NVA G Sbjct: 63 CGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLF 122 Query: 122 RGLLKEQRHRV-DDALALVGLTEFADAFPHQLSGGMAQRVALARALVNDPQLLVLDEPLG 180 RG K Q H + D+ + VGL +F D +PHQLSGGM +RVALA+ +N P++L++DEP Sbjct: 123 RGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFS 182 Query: 181 KLDSLTRLQMQSELVSLWQRNGFSALLVTHDVEEALFLANRVIIFSDRPA 230 LD TR MQ EL+ LW + S + VTHD+EEA+ LA++V + + RPA Sbjct: 183 ALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPA 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 780,615 Number of extensions: 33942 Number of successful extensions: 483 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 143 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)