BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0060.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...   176   8e-46
gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...    99   2e-22

>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score =  176 bits (446), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 104/147 (70%), Gaps = 1/147 (0%)

Query: 4   INFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLLDQTPLRSCVT 63
           I F VNG   S+D+   + PLL  LRN++ L GPKFGCGLG+CGACTVL+D    RSCV 
Sbjct: 7   ITFHVNGVPVSLDIA-ADAPLLNVLRNDLCLNGPKFGCGLGECGACTVLVDGVAARSCVI 65

Query: 64  PLSAVAGKSITTIEGLGTPDKPHPVQAAFIAEQAAQCGYCANGMVMTSAALLASNPKPSE 123
           PL+ VA + +TT++GL    +  PVQ AFI EQ AQCGYC NGM+MT  ALL  +P PSE
Sbjct: 66  PLAGVAARHVTTLDGLEQDGRLDPVQQAFIDEQGAQCGYCLNGMIMTIKALLLRSPTPSE 125

Query: 124 AEIKDALSANLCRCGTHVRILRAVMRA 150
            EI+  L  NLCRCGTHV ILRA +RA
Sbjct: 126 DEIRHELDFNLCRCGTHVEILRAALRA 152


>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 98.6 bits (244), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 13/160 (8%)

Query: 3   TINFTVNGKARSVDVRDPEQPLLYALRNNIGLTGPKFGCGLGQCGACTVLL-----DQTP 57
           +I F   G+  SV    P + +L  LR ++  TG K GC  G CGACTV++     +Q  
Sbjct: 7   SIQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELQGEQLA 66

Query: 58  LRS---CVTPLSAVAGKSITTIEGLGTPDKP-HPVQAAFIAEQAAQCGYCANGMVMTSAA 113
           L++   C+  L  + G+++ T+E L   D   HPVQ A +    +QCG+C  G VM+   
Sbjct: 67  LKTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGFVMSLWG 126

Query: 114 LLASNPK----PSEAEIKDALSANLCRCGTHVRILRAVMR 149
           L   + +    PS+ EI DALS NLCRC  +  I+ A  R
Sbjct: 127 LYLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAARR 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 488,573
Number of extensions: 18617
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)