BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0056.p
         (509 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase [Herb...   779   0.0  
gi|300313170|ref|YP_003777262.1| altronate hydrolase [Herbaspiri...   217   2e-57

>gi|300312450|ref|YP_003776542.1| D-galactarate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 522

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/431 (88%), Positives = 405/431 (93%), Gaps = 2/431 (0%)

Query: 5   TATQASNTNIPRYILMHENDNVAIVVNDRGLPAGTVFPDGLTLISQVPQGHKIALRDIPQ 64
           T T AS  + PRYI+M++ DNVAIVVND GLPAGTVFPDGLTL+ +VPQGHKIALRD+ Q
Sbjct: 3   TDTSASQASAPRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQ 62

Query: 65  GAAIIRYDVAIGYAARDIARGSWIEESVVTLPPARELDNLPIATRKAPALASVPLEGYTF 124
           G AI+RYDVAIGYA RDI +G WIEES+V +PPARELDNLPIAT+K PA    PLEGYTF
Sbjct: 63  GEAIVRYDVAIGYAVRDIPKGGWIEESLVQMPPARELDNLPIATKK-PA-PQPPLEGYTF 120

Query: 125 EGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVRRIRQELLPKYPNVEDVVALEHTYGCG 184
           EGYRNADGSVGTRNLLAITTTVQCVAGVVEHAV+RIR ELLPKYPNVEDVVALEHTYGCG
Sbjct: 121 EGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCG 180

Query: 185 VAIDAPNADIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPESIIPIHKEGEAYVV 244
           VAIDAPNA IPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPE++IPIHK+GE YVV
Sbjct: 181 VAIDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKQGEPYVV 240

Query: 245 CLQDAEHVGFNSMIDSILKMAEARLQELDKRRRVTCPASDLVVGVQCGGSDAFSGVTANP 304
           CLQDAEHVGFNSMIDSI+ MAEARL EL+KRRR TCPASDLVVGVQCGGSDAFSGVTANP
Sbjct: 241 CLQDAEHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGVQCGGSDAFSGVTANP 300

Query: 305 AVGFATDLLVRAGAAVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDKYLQKGGV 364
           AVGFATDLLVRAGA+VMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYD YL++GGV
Sbjct: 301 AVGFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGV 360

Query: 365 DRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLKQKGLIYAATPASDFV 424
           DRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVL+PGDKL+QKGLIYAATPASDF+
Sbjct: 361 DRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLSPGDKLQQKGLIYAATPASDFI 420

Query: 425 CGTLQLAAGMN 435
           CGTLQLAAGMN
Sbjct: 421 CGTLQLAAGMN 431


>gi|300313170|ref|YP_003777262.1| altronate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 222/441 (50%), Gaps = 38/441 (8%)

Query: 28  IVVNDRGLPAGTVFPD--GLTLISQVPQGHKIALRDIPQGAAIIRYDVAIGYAARDIARG 85
           +V+  + L +GTV  D  GL +   +P GHK+A R I  G  + RY   IG A++DIA G
Sbjct: 16  VVIARQQLISGTVLQDEGGLKVQGLIPAGHKMATRAITAGEPVKRYGQIIGTASQDIAPG 75

Query: 86  SWIEESVVTLPP-ARE----LDNLPIATRKAPALASVPLEGYTFEGYRNADGSVGTRNLL 140
             +    + +   +RE     D  P+     PA         TF G    DG V TRN +
Sbjct: 76  QHVHTHNLAMAEFSREHHFGADVKPVDFVATPA---------TFMGIVRPDGRVATRNYI 126

Query: 141 AITTTVQCVA----GVVEHAVRRIRQELLPKYPNVEDVVALEHTYGCGVAIDAPNADIPI 196
            + T+V C A     + ++  R I  E+L  YPN++ VVAL H  GC +        I  
Sbjct: 127 GVLTSVNCSATAARAIADYFRRDIHPEVLADYPNIDGVVALTHGQGCALDSQGEPLQILR 186

Query: 197 RTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPESIIPIHKEGEAY-VVCLQ----DAEH 251
           RTL   + +PNF    +VV LGCE  Q + L+    +   KEGE +    +Q     A+ 
Sbjct: 187 RTLAGYATHPNFAA-VLVVGLGCETNQISGLMESHNL---KEGEYFHTFTIQGTGGTAKT 242

Query: 252 VGFNSMIDSILKMAEARLQELDKRRRVTCPASDLVVGVQCGGSDAFSGVTANPAVGFATD 311
           V     I+ I KM    L + +  +R    A  L +G+QCGGSD +SG+TANPA+G A D
Sbjct: 243 VALG--IEKIKKM----LPKANDIKREPVSAKHLTLGLQCGGSDGYSGITANPALGAAVD 296

Query: 312 LLVRAGAAVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDKYLQKGGVDRSANTT 371
           LLVR G   + SE  E+      LT RAV+ EV + ++  + W+++Y  K   + + N +
Sbjct: 297 LLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGEKLLARIAWWEEYCAKNDAEMNNNPS 356

Query: 372 PGNKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLKQKGLIYAATPASDFVCGTLQLA 431
            GNK GGL  I+EK++G++ K G++ +  V    + +  +G ++  TP  D +  T Q+A
Sbjct: 357 AGNKAGGLTTILEKSLGAVAKGGTTNLVDVYKYAEAVTARGFVFMDTPGYDPISATGQVA 416

Query: 432 AGMNXFRARWPGPGRCRRYGC 452
            G N         GR   YGC
Sbjct: 417 GGANMICFT---TGRGSAYGC 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,498,743
Number of extensions: 63235
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 2
Length of query: 509
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 420
Effective length of database: 1,198,455
Effective search space: 503351100
Effective search space used: 503351100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)