BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0054.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase [Herb...   455   e-129

>gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  455 bits (1171), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/340 (67%), Positives = 272/340 (80%), Gaps = 3/340 (0%)

Query: 23  ANAATMVYVSNADSKDISVLQLNKDGSLDLVEQVPVGGTVMPLAFSPDHRRLYASLRSQP 82
           A AAT+ YVS+ADS+DI VL+LN DGS++L+++V  G TVMPLA SPD + LYASLR +P
Sbjct: 27  AGAATIAYVSHADSQDIYVLRLNNDGSVNLIDKVDTGSTVMPLAISPDRKYLYASLRREP 86

Query: 83  YSVTTFAVDQQSGKLKALSTAPLADNMANLATDKTGRFLFAASYTGHKISVNPISSAGLV 142
           Y+V ++A+D  SGKLKALS APLADNMAN+ATD++GR+L AASY G+KISVN I S G V
Sbjct: 87  YAVASYAIDPASGKLKALSKAPLADNMANIATDRSGRYLLAASYFGNKISVNAIGSDGAV 146

Query: 143 QE-PATVINTGKNAHAVGSDPKNRFVFASNLGSDVILQFKFDAATGKLTPNTPPSVAAKA 201
           Q  P  VI TGKNAH+V  DP N FVFASNLGSDVILQ++FD A+G +TPNTPPSVA+KA
Sbjct: 147 QTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSDVILQYRFDPASGAVTPNTPPSVASKA 206

Query: 202 SAGPRHFVFHPNLRYVFATNELDGTVSTYSYDAAQGTLKLKGSVSAVPPGFKGGAP-AAA 260
            AGPRHFVF P+ R+++  NELD TVSTY+YD   GTL L GS SA+P GF+     AAA
Sbjct: 207 GAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQAGTLTLLGSDSALPEGFQSSEQLAAA 266

Query: 261 DIHLTPDGRFLYASERTSSTLTAYRVNAGTGELTTIGNFATETQPRGFNIDPQGKYLLAA 320
           D+HLTPDGRFLYA+ERTS+TLT YRV+  +G+LT I N  TETQPR FNIDPQG+YLLA 
Sbjct: 267 DLHLTPDGRFLYATERTSNTLTGYRVDRASGKLTRILNIPTETQPRAFNIDPQGRYLLAV 326

Query: 321 GQKSNGLTSYAINPKTGALTPLRHYGLGSNPNWVEIIALP 360
           GQK+ GLTSYAI+  +G LTPL  Y LG NPNWVEII LP
Sbjct: 327 GQKA-GLTSYAIDAASGTLTPLFRYTLGRNPNWVEIIDLP 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,083,803
Number of extensions: 43069
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)