BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0052.p
         (878 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase ox...   650   0.0  

>gi|300312273|ref|YP_003776365.1| 2-oxoglutarate dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 954

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/859 (41%), Positives = 509/859 (59%), Gaps = 32/859 (3%)

Query: 35  IAQFIEAHRNLGHRTARLDPLAIAAPDVTPTPRELTPEFYGLAPA---MARPSGSTVF-P 90
           + Q I  +R+LG R A LDPL        P   EL P FYG   A   +     +T F P
Sbjct: 97  VTQLIAGYRDLGSRFANLDPLQRQE---RPNIPELDPSFYGFTDADMDIVFNINNTYFGP 153

Query: 91  AASTVQQLDRQLKEVYCGAFALDCSGIRDESRRAWLFSRMEASSATLP-SAAQRQTILRR 149
             ++++ L + L++ Y  +   + + I D +   WL  R+E + A    S+ +++ IL R
Sbjct: 154 ETASLRDLLQMLRDTYTRSIGAEFTYISDMAEVRWLEERLEPTRAVPSFSSEKKKHILER 213

Query: 150 LLTAEVWERHLAATAPHAKRFSMEGCESLLPLMDMLIENAAHHGVQQMFLGLPHRGRLNM 209
           L  AE  ER+L       KRFS+EG ES +  +D  I+ A   GVQ++ +G+ HRGRLN+
Sbjct: 214 LTAAEGLERYLHTKYVGQKRFSLEGGESFIASLDETIQRAGEKGVQEIVIGMAHRGRLNV 273

Query: 210 LVNLMDFPVQHILACLNHDSPEAISQNDLPFHLGGSALKQTSKGEVSVFLAHNPSHLQSV 269
           LVN++    Q + +       + +   D+ +H G S+   T  G V + LA NPSHL+ V
Sbjct: 274 LVNILGKTPQELFSEFEGRHADDLPAGDVKYHQGFSSDVSTPGGPVHLSLAFNPSHLEIV 333

Query: 270 YPVVSGMARAFQD---DNPESGCVPVMVHGDAAFAGQGIVMETLNLTRSQGYTLGGTVHI 326
            PVV G  +A  D   D   S  +P++VHGDAAFAGQG+VMETLNL +++GY  GGTVHI
Sbjct: 334 NPVVEGSVKARMDRRGDKDGSQVLPILVHGDAAFAGQGVVMETLNLAQTRGYGTGGTVHI 393

Query: 327 IVNNQIAFTTSNTMDVAGNLYCTDIGRLVDAPVIRVNADHPDDLVRAAAIAFEYRMKYGA 386
           ++NNQI FTTS+  D    LYC+D+ ++++APV+ VN D P+ +V A  IA +YRMK+  
Sbjct: 394 VINNQIGFTTSDPRDSRSTLYCSDVVKMIEAPVLHVNGDDPEAVVFATQIAVDYRMKFKK 453

Query: 387 DVIIDLIGYRRLGHSEHDIPALTHPRLQAAIARHPPVTELYHARLAREAARTSTSISLDS 446
           D+++D+I +R+LGH+E D PALT P +   IA+HP   +LY  +L      T  +I  D 
Sbjct: 454 DIVVDIICFRKLGHNEQDTPALTQPLMYKKIAQHPGTRKLYADKLV-----TQQTIPADG 508

Query: 447 LRTDI--LRSVLTSSPHG----------KAAMQMLPAIDDNAASLFSQPPSLERLQTLAA 494
               +   R+ + +  H           K A+  LP ++            +  L+ LAA
Sbjct: 509 GEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDWLPFLNRKWTDAAETAVPMAELKRLAA 568

Query: 495 IITTPPEDFKAHNVIRQLIQKWQAGAADARNPVDWCFAENLACASLLGDGVDIRLSGLDV 554
            ITT PE FK H+++ +++    A      N +DW   E+LA ASL+  G  +RL+G D 
Sbjct: 569 KITTVPEGFKVHSLVEKVLNDRAAMGRGEMN-LDWGMGEHLAYASLVSSGYAVRLTGQDA 627

Query: 555 GHGTFMHRHARWFAQDDIGQHGGGVFIPLDHIGAGQGRFDIVNSPLTEEAVLGFEYGYSV 614
           G GTF HRHA    Q+   +   G FIPL ++   Q  F +++S L+EEAVL FEYGYS 
Sbjct: 628 GRGTFTHRHAVLHDQNR-ERWDAGTFIPLQNVAENQSTFTVIDSVLSEEAVLAFEYGYST 686

Query: 615 QAQRRLTIWEAQFGDFVNGAQVIVDQYIAPGEHKWGYRSGLTMLLPHGQEGAGPEHSTAY 674
                LTIWEAQFGDF NGAQV++DQ+I+ GE KWG  SGL  +LPHG EG GPEHS+A 
Sbjct: 687 AEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWGRASGLVQMLPHGYEGQGPEHSSAR 746

Query: 675 LGRFLQLCADRNMRIAFPSTSAQWFHLLRQQAVAEDPKPLVVMSPKSHLYGNPRSHSSLQ 734
           + R+LQLCAD NM++  P+T+AQ FHLLR+Q +    KPL++M+PKS L  N  + S L 
Sbjct: 747 IERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLFRKPLIIMTPKS-LLRNKDAGSPLS 805

Query: 735 EMTEGGFKPLLADRDVT-DSTAVERVILCSGKFFYDLDAARNEAHDARTAVIRIEQLYPF 793
           ++ +G F+ ++ + D T D+  V+R++ CSGK +YDL  AR E     TA+IR+EQLYPF
Sbjct: 806 DLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDLVNARKERGQTDTAIIRVEQLYPF 865

Query: 794 PQDALAEALADFPHLSEVVWAQEEDKNQGAWRFVRDALEESLPTGIALRNVCRIATAAGA 853
           P  A A AL  FP+ +E+VWAQ+E +NQGAW  ++  + E+L  G  L    R A+A+ A
Sbjct: 866 PHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHNIFENLSEGQKLAYAGRPASASPA 925

Query: 854 HSSLRRHQQEQRRLVAEAL 872
                +H  +Q+ L+  A 
Sbjct: 926 VGYYDKHYAQQKALIETAF 944


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,905,908
Number of extensions: 128536
Number of successful extensions: 334
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 1
Length of query: 878
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 784
Effective length of database: 1,174,780
Effective search space: 921027520
Effective search space used: 921027520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)