BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0047.p (262 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 425 e-120 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 129 2e-31 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 120 1e-28 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 102 2e-23 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 94 1e-20 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 425 bits (1092), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/253 (82%), Positives = 230/253 (90%) Query: 1 MEVTETPSPLMRPRKKTQSLSQEVVGAISEMISNGAIKPGEKLPTESEIMLTQGVSRTVV 60 M+V++TP+PL+RPR+K QSLSQEVV A++ MISNG++ PG+KLPTESEIM TQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEAQKAGNINIDPATITTMKDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLEA+K GNINIDPATITTM+DLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAAARRSDAQLLEIRQALDAFHENLKKGVDTVGPDFRFHFQIANATGNRYFIEILSHLG 180 GLAAARR++ QL EIR+ALD F N + G DTVGPDFRFHF IANATGNRYFIEI+SHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 AGVIPRKRLNTAELARDPQASYLDRVQREHEDIYEAIARRDTEAARAAMRNHLTNSRERL 240 GVIPRKR+NTAELA D QASYLDRVQREHEDIYEAIAR D EAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAQEAAESAAGA 253 RRAQ+ AES + + Sbjct: 241 RRAQQEAESGSAS 253 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 125/238 (52%), Gaps = 10/238 (4%) Query: 11 MRPRKKTQSLSQEVVGAISEMISNGAIKPGEKLPTESEIMLTQGVSRTVVREAISRLQAA 70 M + Q+LS V + E I GA G KLPTE+ + GVSRTVVREAI+RL+ Sbjct: 1 MFQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHE 60 Query: 71 GLVETRHGIGTFVLEAQKAGNINIDPATITTMKDLLALLELRISLETETAGLAAARRSDA 130 G+VE R G G FV E + ID +++ + +L ++ELR ++E E A AA RRS Sbjct: 61 GVVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAE 120 Query: 131 QLLEIRQALDAFHENLKKGVDTVGPDFRFHFQIANATGNRYFIEILSHLGAGVIPRKRLN 190 L I AL ++ G D V D FH +A AT N YFI+ L L + L Sbjct: 121 DLQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLS------QYLE 174 Query: 191 TAE-LARDPQASYLD---RVQREHEDIYEAIARRDTEAARAAMRNHLTNSRERLRRAQ 244 A + R +A Y D +V+ EHE I EAI D AAR A + H+ N+ RL + Q Sbjct: 175 AATAVTRGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 136/247 (55%), Gaps = 13/247 (5%) Query: 19 SLSQEVVGAISEMISNGAIKPGEKLPTESEIMLTQGVSRTVVREAISRLQAAGLVETRHG 78 +L+ V ++ I G P +LP+E E+ VSRTV+REAISRL++ GLV +R G Sbjct: 29 TLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 Query: 79 IGTFVLEAQKAG----NINIDPATITTMKDLLALLELRISLETETAGLAAARRSDAQLLE 134 GT VL A A ++++D +++ +L ++ELR +E E A LAA RR+ AQ L Sbjct: 89 SGTVVLPANPATPFRLDLDVDDGR-DSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLA 147 Query: 135 IRQALDAFHENLKKGVDTVGPDFRFHFQIANATGNRYF---IEILSHLGAGVIPRKRLNT 191 I+QAL A E G D V DF FH I+NA+ N + ++ LS I R+N Sbjct: 148 IQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNE 207 Query: 192 AELARDPQASYLDRVQREHEDIYEAIARRDTEAARAAMRNHLTNSRERLRRAQEAAESAA 251 A ++ +V+ EH + EAI+ D EAARAA H+ NS +RL+ A A ++A Sbjct: 208 AR-----SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAADRAFWASA 262 Query: 252 GAQQAEK 258 Q A + Sbjct: 263 EGQAAAR 269 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 19/237 (8%) Query: 11 MRPRKKTQSLSQEVVGAISEMISNGAIKPGEKLPTESEIMLTQGVSRTVVREAISRLQAA 70 +RP + + + + + AI E G I G KLP+E+++ VSR VVR+A+ RL+ Sbjct: 27 VRPERFAERVYETLFHAIVE----GRITVGSKLPSENDLATLFEVSRPVVRQALDRLRED 82 Query: 71 GLVETRHGIGTFVLEAQKAGNINIDPAT--ITTMKDLLALLELRISLETETAGLAAARRS 128 LVE+ G GT+V E K G P T + ++ LELR+ +E E A +AA RR+ Sbjct: 83 QLVESLRGSGTYVKE--KPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRN 140 Query: 129 DAQLLEIRQALDAFHENLKKGVDTVGPDFRFHFQIANATGNRYFIEILSHLGAGV----- 183 L + + L+ F + G DF FH IA ATGN F++++ L V Sbjct: 141 RQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVN 200 Query: 184 IPRKRLNTAELARDPQASYLDRVQREHEDIYEAIARRDTEAARAAMRNHLTNSRERL 240 + R ++ A R A +D EH I+E I +D E AR AMR H+ N+R R+ Sbjct: 201 MLRHLMHIAPWKRSQDA--MD----EHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 7/236 (2%) Query: 7 PSPLMRPRKKTQSLSQEVVGAISEMISNGAIKPGEKLPTESEIMLTQGVSRTVVREAISR 66 P L R S S+ + I I G + KLPTE E+ SRT VREA+SR Sbjct: 6 PPSLAASRTHRLSRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 Query: 67 LQAAGLVETRHGIGTFVLEAQKAGNINIDPA-TITTMKDLLALLELRISLETETAGLAAA 125 L++ G+V +R G G +V Q+ ++ + I ++ D+ R +E AG+AA Sbjct: 66 LRSEGIVVSRRGSGNYV---QRLPTLSSQGSPQIASIHDVERYYAFRECVEVGAAGIAAT 122 Query: 126 RRSDAQLLEIRQALDAFHENLKKGVDTVGPDFRFHFQIANATGNRYFIEILSHLGAGVIP 185 R D + +R AL A +G V D H IA AT N +FI + H G I Sbjct: 123 ARQDEDVQAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEH-ALGPI- 180 Query: 186 RKRLNTAELARDPQ-ASYLDRVQREHEDIYEAIARRDTEAARAAMRNHLTNSRERL 240 R+ + A+ PQ + + EH+ I +AIA A AAMR H+ ++R R+ Sbjct: 181 RQCMELAQNLGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRI 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 634,937 Number of extensions: 23294 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 14 Length of query: 262 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 179 Effective length of database: 1,226,865 Effective search space: 219608835 Effective search space used: 219608835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)