BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0040.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312468|ref|YP_003776560.1| hypothetical protein Hsero_3170...   302   1e-83

>gi|300312468|ref|YP_003776560.1| hypothetical protein Hsero_3170
           [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  302 bits (774), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 184/258 (71%), Gaps = 25/258 (9%)

Query: 1   MKSIAWIGGIVAAGLLVGYSVHLAATPNAPKA--------------------APVAEAPA 40
           MK++ W+GGIVAAGLLVG  V L A  +A  A                     P   A A
Sbjct: 1   MKTLYWMGGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAPLAGAVPAVTARA 60

Query: 41  PAAAAAP---YSDNAQYKVGDHLQQAPDLQKTPYKPSGKSDGGFREIAWESLMPKDWDAM 97
            A +  P    + N QY+VGD L+Q+P +   PY+ SGK   G++EIAWE+L+PKDWD M
Sbjct: 61  DAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPM 120

Query: 98  APFKGLKLDKMEDGDPRAMEALWKAKKYWKNAPVDPSMNGAAIRIPGFVVSLEREGEALK 157
           APFKGLKLD++ D DPRA  ALWKAKKYWK+APVD SM G  +R+PGFVVSL+REGEALK
Sbjct: 121 APFKGLKLDQLTDEDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALK 180

Query: 158 EFLLVPYFGACIHVPPPPANQIIHVHSNKPVKNTRTMDAVWISGVLKIERSDTMMGSAGY 217
           EFLLVPYFGACIHVPPPPANQIIHV S K VKN RTMDAVWISGVLK+ERSD+ MG++ Y
Sbjct: 181 EFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 240

Query: 218 SMSSVKVEPYTDGAPQGG 235
           SM +V VEPYT  AP  G
Sbjct: 241 SMKAVSVEPYT--APDNG 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 788,151
Number of extensions: 30472
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)