BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0039.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312467|ref|YP_003776559.1| antimicrobial peptide ABC trans...   592   e-170

>gi|300312467|ref|YP_003776559.1| antimicrobial peptide ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  592 bits (1527), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 325/422 (77%), Positives = 357/422 (84%), Gaps = 2/422 (0%)

Query: 1   MSFLFRLAARSAWNRRYTLGLMLLAIALSSAMLLGIERVRHEVRDSFSQSVSGTDLVVGA 60
           M  L RLA RSAWNRR+TLGLML+AIALS+ MLLGIERVRHEVR  FSQSVSGTDLVVGA
Sbjct: 1   MKILLRLAMRSAWNRRFTLGLMLVAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 60

Query: 61  RTSPVQLMLYAIFRIGGATNNMGWDSAQKLAKNPAVAWTIPLSLGDSHRGFPVLATNGDY 120
           RTSP+QLMLYAIFRIGGATNN+GWDSAQ LA+NPAVAWTIP+SLGDSHRGF VLATNGDY
Sbjct: 61  RTSPIQLMLYAIFRIGGATNNIGWDSAQALARNPAVAWTIPISLGDSHRGFSVLATNGDY 120

Query: 121 FKHFHYGDGQPLQLGEGRVFGSVFETVLGAEVAQRLHYKLGDRIVLSHGMGSLHLTDHAD 180
           F HF YG  QPL+L +G     VF+ VLGA+VA +LHY LGD I+LSHGMG + LT HAD
Sbjct: 121 FTHFRYGSNQPLRLTQGHPMAGVFDAVLGADVAAKLHYHLGDIIILSHGMGGMGLTQHAD 180

Query: 181 KPFTVTGILARTGTPVDRTVHIGLDAMEAIHLDWEGGPPPPPPXIAPALVKKFDLTPKTV 240
           KPF V GILARTGTPVDRTVHIGLD M+AIHLDWEGG P P   I    VKKF+LTP ++
Sbjct: 181 KPFRVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 240

Query: 241 TAVLVGLKSRATVFGVQRDIADDD--SEPLMAVLPGVALDELWQVVGIGENALLVVSGMV 298
           TAVLVGLKSRA VF +QR+IA      EPLMAVLPGVALD+LW VVGIGENALLVVSGMV
Sbjct: 241 TAVLVGLKSRARVFALQREIASGQGYKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 300

Query: 299 VIVGLAGLVSAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVLLT 358
           V+VGLAGLV+AILASLGERRRELA+LRSVGARP DV LLL +EGL VMLAGV  G +LL+
Sbjct: 301 VVVGLAGLVAAILASLGERRRELAILRSVGARPLDVLLLLCIEGLGVMLAGVASGLLLLS 360

Query: 359 LALFALGPFLSAQFGVTLHPALPAAGELQLLGWTVLAGFVASLLPGLRAYRLSLADGLTP 418
           L ++ LGP L+ QFG+ L PA PAAGELQLL WTVLAG VASLLP LRAYRLSL+DGLTP
Sbjct: 361 LLVWTLGPLLAEQFGIALQPAWPAAGELQLLLWTVLAGLVASLLPALRAYRLSLSDGLTP 420

Query: 419 RI 420
           RI
Sbjct: 421 RI 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,203
Number of extensions: 52561
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)