BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0035.p (253 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPas... 384 e-108 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 87 1e-18 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 85 6e-18 gi|300313667|ref|YP_003777759.1| cobalamin/Fe3+ siderophores ABC... 85 6e-18 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 85 7e-18 >gi|300312464|ref|YP_003776556.1| Mn2+/Zn2+ ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 384 bits (985), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/247 (75%), Positives = 212/247 (85%) Query: 1 MPVAISLENLTVTYRRHPALHHVSGEFKRGSLTAIVGPNGAGKSTLLKTVMGQVRCNSGR 60 M AISLENLTV+YRRHPALHHV+G F+RGSLTA+VGPNGAGKSTLLK+++G VRCN GR Sbjct: 1 MNAAISLENLTVSYRRHPALHHVNGAFERGSLTAVVGPNGAGKSTLLKSMLGLVRCNDGR 60 Query: 61 VVTHLAAGRIAYLPQQAEIDRSFPISVLDCVLLGYWSRAGLFRRMSRDMLQRAEEALAAV 120 V+TH+ A RIAYLPQQAEIDRSFPISVLDCVLLGYW G + + M RA +ALAAV Sbjct: 61 VLTHVDARRIAYLPQQAEIDRSFPISVLDCVLLGYWQAKGNWGGIDAAMCARARQALAAV 120 Query: 121 GLDGFAQRAITSLSVGQFQRVLFARILLQDAELILLDEPFNAIDTRTTSDLLRIIQSWHA 180 GLDGF+ R + SLSVGQFQRVLFARILLQDAE+ILLDEPFNAID RTT DLLRII +WHA Sbjct: 121 GLDGFSGRPVASLSVGQFQRVLFARILLQDAEVILLDEPFNAIDARTTGDLLRIISAWHA 180 Query: 181 EQRTVIAVLHDYDQVRKAFPQSLLLARNVVAWGETEGVLCHENLHRARSMAEAVDEHAPL 240 E+RTVIAVLHD+DQVR+AFPQ+LLLAR+VVAWG+T V+C ENL RAR+MAEAVDE A + Sbjct: 181 ERRTVIAVLHDHDQVRRAFPQTLLLARHVVAWGQTAEVMCEENLQRARAMAEAVDEQAGV 240 Query: 241 CAVDVGD 247 C V D Sbjct: 241 CEVSEAD 247 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 12/229 (5%) Query: 3 VAISLENLTVTYRRHPALHHVSGEFKRGSLTAIVGPNGAGKSTLLKTVMGQVRCNSGRVV 62 ++I + ++ + AL+ VS F G LTA++GP+G GK+TLL+ + G +SG+V+ Sbjct: 1 MSIEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVL 60 Query: 63 T--------HLAAGRIAYLPQQAEIDRSFPISVLDCVLLGYWSRAGLFRRMSRDMLQRAE 114 H+ ++ ++ Q + + ++V + + G + R + ++ + Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKH--MTVFENIAFGLRVKPRSQRPSEAVIREKVK 118 Query: 115 EALAAVGLDGFAQRAITSLSVGQFQRVLFARILLQDAELILLDEPFNAIDTRTTSDLLRI 174 L V LD A R LS GQ QR+ AR L + ++LLDEPF A+D + +L R Sbjct: 119 RLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 175 IQSWHAE-QRTVIAVLHDYDQVRKAFPQSLLLARNVVAW-GETEGVLCH 221 ++ H E T I V HD ++ + Q +L+ + V G E V H Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNH 227 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 84.7 bits (208), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 11/182 (6%) Query: 19 ALHHVSGEFKRGSLTAIVGPNGAGKSTLLKTVMGQVRCNSGRVVT--HLAAGRIAYLPQQ 76 A+ + + + G AIVGP+G GKST +K G + N G VV G + ++ Sbjct: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDGQTVTGPLKFVGMA 81 Query: 77 AEIDRSFPI-SVLDCVLLGY-----WSRAGLFRRMSRDMLQRAEEALAAVGLDGFAQRAI 130 + P + LD VLL + R F++ + +RA L VGLDG+A + Sbjct: 82 FQAPTLLPWRTTLDNVLLPLEIVEPYRRD--FKQKKAEYTERALSLLKTVGLDGYADKFP 139 Query: 131 TSLSVGQFQRVLFARILLQDAELILLDEPFNAIDTRTTSDLLRIIQSWHAEQR-TVIAVL 189 LS G QR R L+ + +++LLDEPF A+D T +L +++ AE+R VI V Sbjct: 140 WQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVT 199 Query: 190 HD 191 HD Sbjct: 200 HD 201 >gi|300313667|ref|YP_003777759.1| cobalamin/Fe3+ siderophores ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 84.7 bits (208), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 29/260 (11%) Query: 4 AISLENLTVTYRRHPALHHVS-GEFKRGSLTAIVGPNGAGKSTLLKTVMGQVRCNSGRV- 61 ++ + L V Y RH + + E GS+TA++GPNG+GKSTLL+T+ G R +G V Sbjct: 5 SLCVAGLKVAYGRHSVIQGLDLPELTAGSVTALLGPNGSGKSTLLRTLGGLTRAQAGSVR 64 Query: 62 ---------VTHLAAGRIAYLPQQAEIDRSFPISVLDCVLLGYWSRAGLFRRMSRDM--L 110 A + Y+PQ + R +SV + VL+ + +R D L Sbjct: 65 LGPTELAQADAAARAQHVVYMPQ--SLPRPVHLSVFESVLVAAQA----LQRTRPDTQEL 118 Query: 111 QRAEEALAAVGLDGFAQRAITSLSVGQFQRVLFARILLQDAELILLDEPFNAIDTR---T 167 +R + L +G+ AQR + LS GQ Q A+ L++ ++LLDEP +A+D Sbjct: 119 ERVQALLQHLGIGHLAQRHLDELSGGQRQLAALAQALVRRPRVLLLDEPLSALDLNYQYL 178 Query: 168 TSDLLRIIQSWHAEQRTVIAVLHDYDQVRKAFPQSLLLARN-VVAWGETEGVLCHENLHR 226 DLLR Q + VLHD + + ++LLL + ++ G V+ L Sbjct: 179 VMDLLR--QETRLHGLVTLVVLHDLNTAFRHVDRALLLHQGRLLCAGAAREVITPATL-- 234 Query: 227 ARSMAEAVDEHAPLCAVDVG 246 + A VD C+ G Sbjct: 235 --AQAYGVDGRIEFCSQGYG 252 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 84.7 bits (208), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 21/208 (10%) Query: 1 MPVAISLENLTVTY-------RRHPALHHVSGEFKRGSLTAIVGPNGAGKSTLLKTVMGQ 53 M A+ +N+T T+ +R+ A+ + G ++VGP G GKSTLL G Sbjct: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 Query: 54 VRCNSG--RVVTHLAAG---RIAYLPQQAEIDRSFPI-SVLDCVLLGYWSRAGLFRRMSR 107 ++ +SG +V G R Y+ Q + P S L V+ G R + Sbjct: 61 LQPSSGSVKVFGEELKGINRRAGYMFQAEAL---MPWRSALQNVIAGLQYRG----HEEK 113 Query: 108 DMLQRAEEALAAVGLDGFAQRAITSLSVGQFQRVLFARILLQDAELILLDEPFNAIDTRT 167 + E+ LA VGL GF R LS G +RV A+ L+ D ++IL+DEPF+A+D +T Sbjct: 114 AAAELGEQWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQT 173 Query: 168 TSDLL-RIIQSWHAEQRTVIAVLHDYDQ 194 + ++ W+A+++ V+ + HD D+ Sbjct: 174 RQLMENEVLDLWNAKKKAVLFITHDLDE 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 779,780 Number of extensions: 32379 Number of successful extensions: 444 Number of sequences better than 1.0e-08: 102 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 108 Length of query: 253 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 170 Effective length of database: 1,226,865 Effective search space: 208567050 Effective search space used: 208567050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)