BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0033.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312462|ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter perip...   435   e-123

>gi|300312462|ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/291 (72%), Positives = 246/291 (84%), Gaps = 2/291 (0%)

Query: 21  SAGDARLPVVASFSILGDIVANIGGDRITVTTLVGPDQDAHVFQPAPDHIKSVARARLVI 80
           +A   R+PV+ASFSILGD+VAN+GGDRI V+TLVGPD+DAHVFQPAPD IK+V+RARLV+
Sbjct: 22  AAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPAPDDIKAVSRARLVV 81

Query: 81  VNGLGFEGWMDRVTQSANYRGDIVVASKGIAVRDRVEDEHDHDDHDGHEHHHG--KNDPH 138
           VNGLGFEGWM+R+ QSANYRG IVVAS GI  R+RV ++ D   HD    H    K+DPH
Sbjct: 82  VNGLGFEGWMERLAQSANYRGPIVVASAGIKARERVGEDEDEHGHDHAAAHEHHGKDDPH 141

Query: 139 AWQNPANVVIYTQNIVAALSKLDPSGAVLYRKNGDAYIAALTELDRWAMRQFAQFPPAKR 198
           AWQ+P NVV+YT+NIV AL+KLDP+GA +YRKNGDAYIA L +LD WA RQFAQ P AKR
Sbjct: 142 AWQDPQNVVVYTRNIVTALAKLDPAGAAVYRKNGDAYIAKLQDLDAWAARQFAQIPDAKR 201

Query: 199 KVITSHDAFEYFGAHYQVRFLAPQGVSTDSEPSAKEVANLIRQIRKEKIRAVFIENMSSP 258
           KVITSHDAFEYFGA YQVRFLA QGVSTDSEPSA+E+A LIRQIR EKI+A+F ENMS+P
Sbjct: 202 KVITSHDAFEYFGARYQVRFLAAQGVSTDSEPSAREIAALIRQIRTEKIKALFFENMSNP 261

Query: 259 KLLQQIGKEAGVTLGGKLYADALSQANGPAPTYLKLMRYNIEQLLAQMKLN 309
           KLLQQI +EAG   GGKLYADALS+A+GPAP YL LMRYNI QLL +++LN
Sbjct: 262 KLLQQIAREAGTAPGGKLYADALSKADGPAPDYLSLMRYNITQLLEKIRLN 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 886,848
Number of extensions: 34626
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)