BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0029.p
         (264 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312457|ref|YP_003776549.1| uracil DNA glycosylase [Herbasp...   396   e-112

>gi|300312457|ref|YP_003776549.1| uracil DNA glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 266

 Score =  396 bits (1018), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/261 (79%), Positives = 225/261 (86%), Gaps = 1/261 (0%)

Query: 3   ATVPSALLDLCATADPSWHAILKTGLQAIADLDSDYLPALVQDATYLPTEGRIFAAFKQP 62
           A++P+AL DL  TA PSWHA L+ GLQAIA  D  YL  L  D  YLPTEGR+FAAF+QP
Sbjct: 6   ASLPAALADLIPTAHPSWHAALRAGLQAIAQADPVYLDVLATD-HYLPTEGRLFAAFQQP 64

Query: 63  IDKVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSDKGLSKQVNRATSLRNFMKMLLVAD 122
           +D+VRYVLVGEGPYPRAASATGVCFMDGAVGSLWS+KGLSKQVNRATSLRNFMKMLLVAD
Sbjct: 65  MDRVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSEKGLSKQVNRATSLRNFMKMLLVAD 124

Query: 123 GRVPADKTSGGALLDIAAKAQADTAGTIQTLADLQDNLTAQGFLLLNASLVFRTHVKPVK 182
           GRV A +TSG AL D+AA+AQAD AGTIQTLADLQDNLTAQGFLLLNASLVFRTHV PVK
Sbjct: 125 GRVQAGQTSGDALADVAAQAQADVAGTIQTLADLQDNLTAQGFLLLNASLVFRTHVAPVK 184

Query: 183 DAKAWKPFFETVLKGLAQYAEENKKTLPTLVLWGKIAEELHGLKIVERFPRAVAEHPYNL 242
           DAKAWKPFFETVL+ LA++     KTLPTLVLWGKIAE+L  L +V+ FPRAVAEHPYNL
Sbjct: 185 DAKAWKPFFETVLRALAEHGASQGKTLPTLVLWGKIAEQLDSLPLVQAFPRAVAEHPYNL 244

Query: 243 SFIAHSGMQELFGPMHLLKKR 263
           SFI HSGMQ LFG MHLL KR
Sbjct: 245 SFIEHSGMQALFGAMHLLDKR 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 834,638
Number of extensions: 33667
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 181
Effective length of database: 1,226,865
Effective search space: 222062565
Effective search space used: 222062565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)