BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0027.p
         (422 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312455|ref|YP_003776547.1| aromatic-amino-acid aminotransf...   682   0.0  
gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic ami...   383   e-107

>gi|300312455|ref|YP_003776547.1| aromatic-amino-acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/371 (92%), Positives = 356/371 (95%)

Query: 1   MAPRDPILGITDAYNADKNPGKTNLGVGVYYDDNGKVPLLECVKKAEAELAAKLAPRTYL 60
           MAPRDPILG+T+AYNAD+NP KTNLGVGVYYDDNGKVPLLECVKKAEAELAAKLAPRTYL
Sbjct: 15  MAPRDPILGVTEAYNADQNPAKTNLGVGVYYDDNGKVPLLECVKKAEAELAAKLAPRTYL 74

Query: 61  PIDGLATYDKAVQELVFGADSAVVQEKRAITVQALGGTGALKLGADFIKHFSPASTQIWI 120
           PIDGLATYD+AVQELVFGA SAVV EKRAITVQALGGTGALKLGADF+KHFSPA T++WI
Sbjct: 75  PIDGLATYDRAVQELVFGAGSAVVTEKRAITVQALGGTGALKLGADFLKHFSPAGTEVWI 134

Query: 121 SDPSWENHRALFEMAGFTVNNYPYYDAATRGVNFAGMLDALKTMAAGSVVLLHACCHNPT 180
           SDPSWENHRALFEMAGF VN YPYYD ATRGVNFAGMLDALKTM +GSVVLLHACCHNPT
Sbjct: 135 SDPSWENHRALFEMAGFKVNAYPYYDPATRGVNFAGMLDALKTMKSGSVVLLHACCHNPT 194

Query: 181 GADLTADQWTQVIEVVTSRGLIPFLDMAYQGFGDGIEEDGKVVRRFAEAGGPLFVSNSFS 240
           GADLT DQWTQVIEVVTSRGL+PFLDMAYQGFGDGI EDG+VVRRFAEAGGPLFVSNSFS
Sbjct: 195 GADLTDDQWTQVIEVVTSRGLVPFLDMAYQGFGDGIAEDGQVVRRFAEAGGPLFVSNSFS 254

Query: 241 KSFSLYGERVGALSIVASTNEEAARVLSQLKRVVRTNYSNPPIHGGQVVATALASPELRA 300
           KSFSLYGERVGALSI A++ EEAARVLSQLKRVVRTNYSNPPIHGGQVVATALASPELR 
Sbjct: 255 KSFSLYGERVGALSIAAASAEEAARVLSQLKRVVRTNYSNPPIHGGQVVATALASPELRK 314

Query: 301 LWESELAEMRVRIREMRQLLVAKLKEKAPAHDFDFVIKQRGMFSYSGLTKAQVERLRNEF 360
           LWE ELAEMRVRIREMRQLLVAKLKEKAP HDFDFVIKQRGMFSYSGLTKAQV+RLRNEF
Sbjct: 315 LWEDELAEMRVRIREMRQLLVAKLKEKAPGHDFDFVIKQRGMFSYSGLTKAQVDRLRNEF 374

Query: 361 SIYAVDTGRIC 371
           SIYAVDTGRIC
Sbjct: 375 SIYAVDTGRIC 385


>gi|300313687|ref|YP_003777779.1| aspartate/tyrosine/aromatic
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/367 (52%), Positives = 244/367 (66%), Gaps = 3/367 (0%)

Query: 5   DPILGITDAYNADKNPGKTNLGVGVYYDDNGKVPLLECVKKAEAELAAKLAPRTYLPIDG 64
           DPIL + + +  D+   K NL +G+Y D  G VP+L  V+ A A +A   AP  YLP++G
Sbjct: 11  DPILSLMEQFQRDERSNKVNLSIGIYTDGKGVVPVLPSVRTAAAAVAQADAPYVYLPMEG 70

Query: 65  LATYDKAVQELVFGADSAVVQEKRAITVQALGGTGALKLGADFIKHFSPASTQIWISDPS 124
              Y +AV +L+FGAD     E  AI VQ LGG+GALK+GAD I  F P  T IW+ DP+
Sbjct: 71  HGAYRQAVAKLLFGADLPA-PEHLAI-VQTLGGSGALKVGADLIARFFPQPT-IWLPDPT 127

Query: 125 WENHRALFEMAGFTVNNYPYYDAATRGVNFAGMLDALKTMAAGSVVLLHACCHNPTGADL 184
           W+NH  +FE AGF    YPYYDA T+G+NF GML  + ++  G+VVLLH CCHNPTG D 
Sbjct: 128 WDNHIGIFEGAGFKTERYPYYDAQTKGLNFEGMLAKIDSLPRGAVVLLHPCCHNPTGVDP 187

Query: 185 TADQWTQVIEVVTSRGLIPFLDMAYQGFGDGIEEDGKVVRRFAEAGGPLFVSNSFSKSFS 244
           T  QW Q++EVV  RGL+PF D+AYQGF + ++ED   VR       P F+SNSFSK FS
Sbjct: 188 TRAQWEQIVEVVEKRGLLPFFDLAYQGFAESLDEDIWPVREAVRRQIPFFLSNSFSKIFS 247

Query: 245 LYGERVGALSIVASTNEEAARVLSQLKRVVRTNYSNPPIHGGQVVATALASPELRALWES 304
           LY ER+GALS+      +AA VL QLK  VR NYS+PP +G  +VA  L   +L A W  
Sbjct: 248 LYSERIGALSVFCPQAGQAANVLGQLKLTVRRNYSSPPRNGALLVAHVLGDDKLAAQWRG 307

Query: 305 ELAEMRVRIREMRQLLVAKLKEKAPAHDFDFVIKQRGMFSYSGLTKAQVERLRNEFSIYA 364
           E+ EMRVR+R+MR  L ++LK   P  DF F+++Q GMF Y+GL+ AQV+RLR EF +YA
Sbjct: 308 EVEEMRVRVRDMRVKLASQLKSAVPDQDFSFLLRQNGMFGYTGLSSAQVDRLREEFGVYA 367

Query: 365 VDTGRIC 371
           V TGRIC
Sbjct: 368 VGTGRIC 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,771
Number of extensions: 46995
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 422
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,203,190
Effective search space: 401865460
Effective search space used: 401865460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)