BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0019.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like ...   367   e-103
gi|300309940|ref|YP_003774032.1| biopolymer transport transmembr...    57   1e-09

>gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  367 bits (941), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/201 (89%), Positives = 192/201 (95%)

Query: 1   LFAIIQAAGWPIWPLLIASVIGLALIIERLLYLRRSRVLPGDLLPEVVRVYESGRVNDDV 60
           + AII AAGWPIWPLLIAS+IGLAL+IERL+YLRRSR+LP DLL +VVRVY+SGR+ DDV
Sbjct: 1   MLAIILAAGWPIWPLLIASIIGLALVIERLVYLRRSRILPPDLLNQVVRVYQSGRITDDV 60

Query: 61  IDKLEQNSPLGQVLAAGLRNVDAPREVMKEAIEEAGQAAAHRLERYLTTLGTIASLAPLM 120
            DKLEQNSPLG VLAAGLRNVDAPREVMKEAIEEAGQAAAHRLER+LTTLGTIASLAPLM
Sbjct: 61  ADKLEQNSPLGHVLAAGLRNVDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLM 120

Query: 121 GLFGTVIGMIEIFASQNAAGTNPSQLAHGISIALYNTGFGLAIAMPALVFYRHFRALVDG 180
           GLFGTV+GMIEIFASQNAAGTNP+QLAHGISIALYNTGFGLAIAMPALVFYRHFRALVDG
Sbjct: 121 GLFGTVVGMIEIFASQNAAGTNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALVDG 180

Query: 181 FVVDMEQQAVKFVDVVHGSRQ 201
           FVVDMEQQAVKFVD+VH  R+
Sbjct: 181 FVVDMEQQAVKFVDIVHDVRR 201


>gi|300309940|ref|YP_003774032.1| biopolymer transport transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 84  PREVMKEAIEEAGQAAAHRLERYLTTLGTIASLAPLMGLFGTVIGMIEIFASQNAAGT-N 142
           P E++   +       + RLER LT L ++ S AP +GLFGTV G+     + +A+GT  
Sbjct: 107 PGELITRTLRREINRVSARLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQ 166

Query: 143 PSQLAHGISIALYNTGFGLAIAMPALVFYRHFR-------ALVDGFVVDME 186
             ++A  +  AL  T  GL +A+PA++ Y  F        A +DGF  D+ 
Sbjct: 167 IDKVAGPVGEALIMTALGLLVAIPAVLAYNAFTRINRVVLAELDGFAHDLH 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,183
Number of extensions: 28065
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 5
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)