BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0017.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312513|ref|YP_003776605.1| hypothetical protein Hsero_3215...    95   9e-22

>gi|300312513|ref|YP_003776605.1| hypothetical protein Hsero_3215
          [Herbaspirillum seropedicae SmR1]
          Length = 95

 Score = 95.1 bits (235), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 55/75 (73%)

Query: 9  DAWKLRADELRLQIEALLEAQLCEYELLNAKLEEWKKNPGAEWLTMADYEPWQAALKSLE 68
          D W  RA+EL+ Q+E LL AQL EYEL+ +KLE+WK+NPG  WLT  DY PWQ ALK LE
Sbjct: 20 DPWIERAEELKSQMEVLLVAQLEEYELMTSKLEQWKQNPGNSWLTEEDYRPWQEALKKLE 79

Query: 69 LAQRELDEHISVRPK 83
           AQRE D HIS R K
Sbjct: 80 AAQREFDSHISSRVK 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,465
Number of extensions: 8709
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)