BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0016.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large ...   385   e-108

>gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  385 bits (989), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/282 (69%), Positives = 227/282 (80%)

Query: 71  PHVRVILYPTPVQGEGAGAKIARAIQTASQRAECDVLLVGRGGGSMEDLWAFNDEAVARA 130
           PHV V+LYPTPVQGEGAG +IA AI  AS+RAECDVLLV RGGGS+EDLW+FN+E VARA
Sbjct: 157 PHVEVVLYPTPVQGEGAGQRIAAAIGRASERAECDVLLVCRGGGSIEDLWSFNEEVVARA 216

Query: 131 IAACPMPVISGVGHETDFTIADFAADLRAPTPTAAAELCATPRAEWQAQLQNHAADLTRA 190
           I A  MPVISGVGHETDFTIADFAADLRAPTPTAAAEL A+ R +W A+L+ HAADLTRA
Sbjct: 217 IVAATMPVISGVGHETDFTIADFAADLRAPTPTAAAELAASSRQDWLAELRGHAADLTRA 276

Query: 191 LRRRLAEQGQTVDWMSRRLVSPASYIAHERVKLRALQARLEHATRTPVTRARYQLQHLQT 250
           LRR LA++ Q+VDW+SRRLVSP++YI HERVKL ALQ RL HA + P+TR R+ LQ L +
Sbjct: 277 LRRTLADKAQSVDWLSRRLVSPSAYIQHERVKLLALQNRLSHANQIPLTRMRHGLQQLAS 336

Query: 251 RLQNRLPDTRAARLLVGGHQRRIGNAVALLVQRQRQTLAAQSSQLELLNPQRTLERGYAI 310
           RL ++LPDTR AR  +    RR+  A       QRQTL    SQLELLNPQRTLERGYAI
Sbjct: 337 RLAHQLPDTRHARRDLAELARRLQRAQGAQQSAQRQTLTTLHSQLELLNPQRTLERGYAI 396

Query: 311 VTDAKGKVLRAPSELKPRSNVTLRLADGSAEVGIASVQPTLD 352
           V+D +G+VL +P+EL  RS +T+RLA GSAEVGIASVQP LD
Sbjct: 397 VSDHQGRVLHSPAELAARSEITIRLAQGSAEVGIASVQPRLD 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 964,235
Number of extensions: 36394
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)