BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0013.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...   299   2e-82
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...    54   1e-08

>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score =  299 bits (765), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 139/232 (59%), Positives = 176/232 (75%)

Query: 1   MLQIRKSNERGVADHGWLNSHHTFSFGHYYDPQQLGFGPLQVINEDRVTPGMGFGTHGHS 60
           M++IRK+N+RG A+HGWL+S+H+FSF  YYDP+ +GFGPL+VINEDRV  G GFGTHGH 
Sbjct: 1   MMEIRKANDRGHANHGWLDSYHSFSFADYYDPRHMGFGPLRVINEDRVAAGQGFGTHGHR 60

Query: 61  DMEIISYVLDGALEHKDSMGTGSVLHYGDVQRMSAGSGVRHSEFNHSKTEPVHFLQIWIQ 120
           DMEIISYVL+G L HKDSMG GSV+  GDVQRMSAG+GVRHSE+NHS+    HFLQIWI 
Sbjct: 61  DMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTTHFLQIWIM 120

Query: 121 PNVKGIPPSYEEKNFTPEQKQGQLRLIASSDGRDNSVLIHQDASIFASILNGDAKLEHAL 180
           P+  G  P Y+E +F+   K G+LRL+AS+DGRD SV ++QDA ++A + +G    E+ L
Sbjct: 121 PDRAGAEPGYQEAHFSAADKDGKLRLVASADGRDGSVSMNQDAQLYAGLFDGAQTAEYTL 180

Query: 181 GAKRLGYVHLIRGRLTVNGTQLSGGDALKISAESLITFEKAEAAEFLLFDLP 232
              RLGYVH+ RG+++VNG  L  GDA+K+SA   I     + AE LLFDLP
Sbjct: 181 PQGRLGYVHVARGKISVNGQALEAGDAVKLSAVDRIEIGGGDKAEVLLFDLP 232


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 22/189 (11%)

Query: 57  HGHSDMEIISYVLDGALEHKDSMGTGSVLHYGDVQRMSAGSGVRHSEF----NHSKTEPV 112
           H H  +  ++Y+  GA+ H+DS+G    +  G V  M+AG G+ HSE        +  PV
Sbjct: 57  HPHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPV 116

Query: 113 HFLQIWIQPNVKGIPPSYEE---------KNFTPEQKQGQLR---LIASSDGRDNSVLIH 160
           H LQ+W+      +P   E+          +  P+   G  R   L  S+ G  + V   
Sbjct: 117 HGLQMWV-----ALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTA 171

Query: 161 QDASIFASILNGDAKLEHALGAKRLGYVHLIRGRLTVNGTQLSGGDALKISAESLITFEK 220
                 A      A LE A   +    V+++RG ++++G +L  G    +   + +T + 
Sbjct: 172 SPTLYVAGSTTDGATLEIAAEVQERA-VYVVRGEVSLDGERLEAGTLAILEPGAAVTLQA 230

Query: 221 AEAAEFLLF 229
                F++ 
Sbjct: 231 EGETVFMIL 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 786,652
Number of extensions: 33918
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)