BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0011.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie...   101   1e-23
gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie...    77   3e-16
gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod...    77   4e-16
gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie...    75   1e-15

>gi|300311442|ref|YP_003775534.1| acyl-carrier-protein
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  101 bits (251), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%)

Query: 2   TFKYTETGPVGLIQGKKVYVFTSRGGVYSEGPAKVMDFHETYLRAVLGFIGMTDITFVHS 61
           TFKYTETGPVGL+ GKK  +  SRGG+YSEGP + +DF   YL++ LGFIG+TD+  V +
Sbjct: 118 TFKYTETGPVGLVTGKKAVIILSRGGMYSEGPMEALDFQGKYLKSALGFIGITDVELVVA 177

Query: 62  EGLGMGEAAVEKAIAQTRETIGSLV 86
           EG+ MGE A ++A+A     I + V
Sbjct: 178 EGVSMGEEAAKQAVASAEAKINASV 202


>gi|300313768|ref|YP_003777860.1| acyl carrier protein
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score = 76.6 bits (187), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%)

Query: 2   TFKYTETGPVGLIQGKKVYVFTSRGGVYSEGPAKVMDFHETYLRAVLGFIGMTDITFVHS 61
           TF+YTE GP+GL   K V + ++RGG+YS GPA VMD  E YL+A  GF+G+  + FV +
Sbjct: 118 TFRYTENGPLGLSGEKAVIIASTRGGMYSSGPAAVMDHQEAYLKAFFGFLGIERVRFVRA 177

Query: 62  EGLGMGEAAVEKAIAQTRETIGSLVA 87
           E L  G     +++    + + S+VA
Sbjct: 178 ERLIKGAELRSQSMRAALDEVPSVVA 203


>gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein]
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 76.6 bits (187), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 2   TFKYTETGPVGLIQGKKVYVFTSRGGVYSEGPAKV-MDFHETYLRAVLGFIGMTDITFVH 60
           TF YT+ GP GL++G++ Y+ + RGG Y+EG A+  +D  E YLR +LGF+G+ D++ V 
Sbjct: 116 TFAYTDAGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVR 175

Query: 61  SEGLGMGE 68
           +EG+ MG+
Sbjct: 176 AEGVAMGD 183


>gi|300309901|ref|YP_003773993.1| acyl carrier protein
           phosphodiesterase [Herbaspirillum seropedicae SmR1]
          Length = 205

 Score = 74.7 bits (182), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%)

Query: 1   VTFKYTETGPVGLIQGKKVYVFTSRGGVYSEGPAKVMDFHETYLRAVLGFIGMTDITFVH 60
           VTF Y + GP GL+ GKK Y+  + GGV+SEG     DF   YL  +L FIG++D+  V 
Sbjct: 116 VTFAYDDNGPKGLLTGKKTYLVAAAGGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVC 175

Query: 61  SEGLGMGEAAVEKAIAQTRETIGSLV 86
            EG   G  A + AIA T   +  L+
Sbjct: 176 VEGTVFGPDAAKAAIANTEAAVQVLL 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 264,022
Number of extensions: 9684
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)