BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0008.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...    88   1e-18
gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...    79   1e-15

>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 163/376 (43%), Gaps = 45/376 (11%)

Query: 22  EAFLFWLKLGFISFGGPAGQISIMHQELVENRRWISERRFLHALNYCMLLPGPEAQQLAT 81
           E FL +L+LG  SFGGPA  +     E V  R W+SE  +   +  C  LPGP + Q+  
Sbjct: 94  EVFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGM 153

Query: 82  YIGWLMHRTFGGIVAGVLFVFPSLLILIILSWLYIAFGHLPVVEGLFYGIKPAVTAIVLQ 141
            IG L     G + A + F  PS L+L+ L+   +   H    E + +G+K    AIV Q
Sbjct: 154 AIGVLRAGYGGALAAWLGFTLPSALLLMGLALSVLQQAHWLSAE-VVHGLKIVAVAIVAQ 212

Query: 142 AAHRIG---SRALKNNVLWAIAAVSFVAIFALNLPFPLIVAMAALIGYLGGKIAPSKFAV 198
           A   +     R L+  V+   AA++ + +        +IV  AAL G+L  K  P+    
Sbjct: 213 AVWGMAGSLCRGLQRQVITLAAALAALLMSGALAQLAIIV-TAALAGWLLLKSVPT---- 267

Query: 199 GGGHGASKKSFGKALIDDDTPTPRHALFSWTGLLKIVLIGALLWAIPMCGLTAIYGWE-H 257
                        A +DD  PT    L    G   ++L   LL  IP     A+  W   
Sbjct: 268 -------------ARLDDLPPT----LNRRVGAACLLLFLGLLLGIP-----ALAAWHPA 305

Query: 258 TYAQMGWFFTKAALMTFGGAYAVLPYVYQGAVGHFSWLTPTQMIDGLALGETTPGPLIMV 317
           ++ Q+   F +   + FGG + VLP + Q  +    WL     + G    +  PGPL  +
Sbjct: 306 SWLQLTSIFYRVGSLVFGGGHVVLP-LLQAELVPAGWLDKDVFLAGYGAAQAVPGPLFTL 364

Query: 318 VAFVGFV-GGYAKAVLGPDHLFLAGAMAASLVTWFTFLPSFLFILAGGPLVEATHQDIKF 376
            A++G V   +   V G     +A            F PSFL ++   P  ++  ++   
Sbjct: 365 AAYLGVVMSSWPNGVAGGLLCLVA-----------IFTPSFLLVIGLLPFWDSVRRNGPM 413

Query: 377 TAPLTAITAAVVGVIL 392
            A L  + AAVVG++L
Sbjct: 414 QAALAGVNAAVVGLLL 429


>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 12/179 (6%)

Query: 1   VNEIEVTSPANDDISPSV---NFREAFLFWLKLGFISFGGPAGQISIMHQELVENRRWIS 57
           ++E+ +++P  D ++P       RE FL +L LG  +FGG    + + H+ +VE R+W++
Sbjct: 9   LHEMMMSTP--DLLAPERPVPTTRELFLGFLGLGMTAFGG---ALPLAHRMIVERRKWLT 63

Query: 58  ERRFLHALNYCMLLPGPEAQQLATYIGWLMHRTFGGIVAGV--LFVFPSLLILIILSWLY 115
           +  F+  L  C  LPG     L+  +G +  R + G +AGV  L   PS +++I+L  +Y
Sbjct: 64  DPEFVELLGLCQFLPGGNIINLSVALG-MKFRGWKGALAGVTGLIAVPS-MVVILLGMIY 121

Query: 116 IAFGHLPVVEGLFYGIKPAVTAIVLQAAHRIGSRALKNNVLWAIAAVSFVAIFALNLPF 174
             F H P V+ LF G+  A   +++Q A +I     KN VL  +A V FVAI  L +P 
Sbjct: 122 QHFQHDPNVKHLFAGLAAAAAGLLIQMAVKIALPLRKNLVLAGVAVVCFVAIALLRIPL 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,486,709
Number of extensions: 62936
Number of successful extensions: 275
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 2
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)