BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0001.p
         (621 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase [Herb...  1041   0.0  

>gi|300313801|ref|YP_003777893.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/623 (78%), Positives = 548/623 (87%), Gaps = 4/623 (0%)

Query: 1   MSADLILLNGNFHTIDKAQPLASAVAIKDGKFLAVGDAEAAMRHRGDATKVVDLNGRSVV 60
           ++ DLILLNG  HT+DK  P+A AVAI  GKFL VG A   MR +  AT+V+DL GR+V+
Sbjct: 7   VTPDLILLNGKIHTVDKQNPIAEAVAIGGGKFLEVGSAAEVMRLKQAATQVIDLGGRTVI 66

Query: 61  PGLNDSHIHLIRGGLNYNLELRWEGVPSLADALRMLREQALRTPHPQWVRVVGGWTEFQF 120
           PGLNDSH+HLIRGGLNYNLELRWEGVPSLADALRML++QA RTPHPQWVRVVGGWTEFQF
Sbjct: 67  PGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQAARTPHPQWVRVVGGWTEFQF 126

Query: 121 AERRMPTLEEINAAAPDTPVFILHLYDRALLNQAALRAVGYNKDTPNPPGGEIQRDAAGN 180
           AE+RMPTLEE+NAAAPDTPVF+LHLYDRALLN+AAL+AVGY KDTPNPPGGEI RDA+GN
Sbjct: 127 AEKRMPTLEELNAAAPDTPVFVLHLYDRALLNRAALQAVGYTKDTPNPPGGEIVRDASGN 186

Query: 181 PTGMLIARPNAMILYATLAKGPSLPLEQQVNSTRQFMRELNRLGVTSVIDAGGGFQNYPE 240
           PTGMLIARPNAMILYATLAKGP+LP E QVNSTRQFMRELNRLGVTS IDAGGGFQNYP+
Sbjct: 187 PTGMLIARPNAMILYATLAKGPTLPQEYQVNSTRQFMRELNRLGVTSAIDAGGGFQNYPD 246

Query: 241 DYAIIDQLAREQQLTVRIAYNLFTQNKGKELGDFQRWTDMIKPGQGDDFYRHNGAGEMLV 300
           DY II++LA + QLT+RIAYNLFTQNKG EL DFQ+WT M+KPG GDDF RHNGAGEMLV
Sbjct: 247 DYQIINKLAADGQLTIRIAYNLFTQNKGGELADFQKWTGMVKPGDGDDFLRHNGAGEMLV 306

Query: 301 FSAADFEDFLEPRPELAAGMEDELEKVVRHLVSNRWPFRLHATYDESISRMLDVFEKVNR 360
           FSAADFEDFLEPRP+LA GME+ELE+VVRHLVSNRWPFRLHATYDESI+RMLDVFEKVNR
Sbjct: 307 FSAADFEDFLEPRPDLAEGMEEELERVVRHLVSNRWPFRLHATYDESIARMLDVFEKVNR 366

Query: 361 DIPFNGLHWIFDHAETISPRNIERVRELGGGLAIQHRMAFQGEYFVDRYGKEAARATPPV 420
           DIPF+GLHW+FDHAETI+ RNIERV+ LGGG+AIQHRMAFQGEYF+DRYG EAA  TPP+
Sbjct: 367 DIPFDGLHWMFDHAETITERNIERVKALGGGIAIQHRMAFQGEYFIDRYGSEAAEHTPPI 426

Query: 421 ARMLDLGVPVGAGTDATRVASYNPWTALYWLVSGKTVGGLQL--AEAGLPRETALELWAA 478
           A+ML++GVPVGAGTDATRVASYNPWTALYWLVSG+TVGG +L  A   LPRETALELW A
Sbjct: 427 AKMLEMGVPVGAGTDATRVASYNPWTALYWLVSGRTVGGAKLYGAAGRLPRETALELWTA 486

Query: 479 GSAWFSNEQDKKGRIKAGQLADLVVLSADFFSVAEEDIKAIESVMTVVGGKIVYGADEFD 538
           GSAWFS+EQ KKGRI+AGQLADL VLSADFFSV E++IK IES+MTVV GK+VYGA  F 
Sbjct: 487 GSAWFSSEQAKKGRIQAGQLADLAVLSADFFSVHEDEIKGIESLMTVVDGKVVYGAGPFS 546

Query: 539 PLAPPAIPVLPDWSPVKNVPGHYSARKSGTQSGQQQRRAILPHQCAGACNVHAHSHDVAR 598
              P  IPVLP+WSPV  VPGHY  R        +Q++A LPH C G+C VH H+HDVAR
Sbjct: 547 SHGPGEIPVLPEWSPVAKVPGHY--RAVAKTDAARQKKATLPHACVGSCGVHGHAHDVAR 604

Query: 599 RSSVPASNFSGFWGALGCSCFAF 621
           +SSVP SNF+GFWGALGCSCFAF
Sbjct: 605 KSSVPVSNFAGFWGALGCSCFAF 627


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,158,638
Number of extensions: 100029
Number of successful extensions: 312
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 530
Effective length of database: 1,188,985
Effective search space: 630162050
Effective search space used: 630162050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)