BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0122.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein...   259   3e-70
gi|300311009|ref|YP_003775101.1| DNA repair system specific for ...   127   1e-30

>gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  259 bits (661), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 176/228 (77%), Gaps = 2/228 (0%)

Query: 113 LITLTFQVTASLLQPLVGLYTDKHPKPYSLAIGMGSTLCGLLLLSVAPNFGILLVAAALV 172
           LITLTFQVTASLLQP +G+YTD+HP+P+ L  G  +TL G++LLS+A +F   L+AAALV
Sbjct: 72  LITLTFQVTASLLQPWIGMYTDRHPQPWLLPSGAVATLVGIVLLSMAGSFPAFLLAAALV 131

Query: 173 GTGSSVFHPEASRVARMASGGRHGLAQSLFQVGGNAGSAMGPLLAAWIIIPGGQHSIAWF 232
           G GSS FHPEASR+ARMASGGR GLAQS FQVGGNAGSA GPLLAA I++P GQ ++AWF
Sbjct: 132 GIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIVVPFGQANVAWF 191

Query: 233 TIAALIAIVVLRQIGHWYQRQQLAGKTKQKKKAHGFVELPRNKVIMAVSILLLLIFSKYF 292
            + AL++I+VL ++  WY+    A K + K +A     LP   V  A+ +L LL+FSKYF
Sbjct: 192 VLLALLSILVLTRVSGWYRSHLAATKGRTKPRATH--SLPAATVRRALVVLALLVFSKYF 249

Query: 293 YMASLSSYFTFYLISKFQLSVQDAQIHLFVFLFAVAIGTVAGGPIGDK 340
           YMAS +SYFTFYLI +F LSV  +Q++LF+FL AVA+GT  GGPIGD+
Sbjct: 250 YMASFTSYFTFYLIDRFHLSVASSQLYLFLFLGAVAVGTFVGGPIGDR 297


>gi|300311009|ref|YP_003775101.1| DNA repair system specific for
           alkylated DNA repair protein [Herbaspirillum seropedicae
           SmR1]
          Length = 217

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 74/100 (74%), Gaps = 2/100 (2%)

Query: 1   MTGDLFAAL-RAPSIEPIADGATWLRAYAD-DDAVALMQAIQQVTAQAPFRRMQTPGGYT 58
           MTGDLFA L R P++E I +GA  LRA+ D  +A  LM+ I  V AQ+P R MQTPGG+ 
Sbjct: 1   MTGDLFAGLERTPAVERITEGALLLRAFVDASEAAQLMRDIATVLAQSPLRHMQTPGGFR 60

Query: 59  MSVAMSNCGELGWVTDRRGYRYQREDPLSQQPWPAMPEIF 98
           MSVAMSNCG+ GWVTDRRGYRYQ  DPLS++ WP MP  F
Sbjct: 61  MSVAMSNCGQYGWVTDRRGYRYQSLDPLSERDWPPMPASF 100


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,150,215
Number of extensions: 45701
Number of successful extensions: 281
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)