BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0121.p
         (118 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...   109   6e-26
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    54   3e-09

>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score =  109 bits (272), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query: 1   LGDDPDRLVRDLQDQFPQAELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQR 60
           LG+D D LVR LQD+FPQA+L  GDA FE+ +A+V+  +E P+    LPLDVRGTAFQQR
Sbjct: 229 LGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPRQGAALPLDVRGTAFQQR 288

Query: 61  VWQALRDIPAGQRVTYSDIAGRIGSPT 87
           VWQALR IP G  +TYS++A R+G P 
Sbjct: 289 VWQALRSIPPGVTLTYSELAARLGQPA 315


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%)

Query: 19  AELIGGDATFEKLVAKVIGFIESPQGDLNLPLDVRGTAFQQRVWQALRDIPAGQRVTYSD 78
           AE    DA   + V ++  ++  P    +LP    G+AFQQRVWQA+  IP GQ +TY  
Sbjct: 54  AEKDATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQ 113

Query: 79  IAGRIGSPTR 88
           +A RI S  R
Sbjct: 114 VAKRIQSAPR 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,247
Number of extensions: 19239
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 2
Length of query: 118
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,269,480
Effective search space: 55857120
Effective search space used: 55857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)