BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0119.p (172 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311006|ref|YP_003775098.1| transcription regulator protein... 308 2e-85 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 129 1e-31 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 105 1e-24 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 104 4e-24 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 102 2e-23 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 308 bits (789), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 147/171 (85%), Positives = 158/171 (92%) Query: 1 MSTITVDRFDLALLAELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLD 60 MS I VDR+DLALL ELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLD Sbjct: 1 MSIINVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLD 60 Query: 61 PAVIGLGVTAFTNVTLDRQGETRGIQFEEAVQDMPEIMECFSITGEADYILRIVAPDLAA 120 PAV+GLGVTAFT VTLDRQGETRG FE+AV+ MPE+ ECFS+TGE DYILRIVAPDLAA Sbjct: 61 PAVVGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAA 120 Query: 121 FSEFMMTRLLRLPGVTNVKSNITMKQVKHSHVLPLDHVTQPAQSRQRIKFS 171 FSEFMMTRLLRLPGVTNVKSNIT+K+VK SH LPL+HV QP +SRQRI+FS Sbjct: 121 FSEFMMTRLLRLPGVTNVKSNITLKKVKQSHELPLEHVMQPVKSRQRIRFS 171 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 129 bits (323), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 91/149 (61%) Query: 6 VDRFDLALLAELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVIG 65 +D DL +L LQ + I+N L +++LS S RV+RLE +I RY A+ DP ++G Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 66 LGVTAFTNVTLDRQGETRGIQFEEAVQDMPEIMECFSITGEADYILRIVAPDLAAFSEFM 125 L V F V L+RQG QFE AV E+ME + +TG+ DY+LRIV PDL F+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 126 MTRLLRLPGVTNVKSNITMKQVKHSHVLP 154 + L ++PG+ N++S+ +KQ+K+ LP Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 105 bits (263), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 89/150 (59%) Query: 6 VDRFDLALLAELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVIG 65 +D+ +LAELQ DG I+N L +V+LS + RV++L+EA I Y A L+P ++ Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 66 LGVTAFTNVTLDRQGETRGIQFEEAVQDMPEIMECFSITGEADYILRIVAPDLAAFSEFM 125 + + F V LDR +F+++VQ +PEIMEC + G DY+++ D+ A+ EF+ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 126 MTRLLRLPGVTNVKSNITMKQVKHSHVLPL 155 LL+L GV + M++VK++ LP+ Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 104 bits (259), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 83/147 (56%) Query: 4 ITVDRFDLALLAELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 +++DR D +L LQ+DG I N+ L +K+ +S + +RL E ++ A+LDP Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 64 IGLGVTAFTNVTLDRQGETRGIQFEEAVQDMPEIMECFSITGEADYILRIVAPDLAAFSE 123 +GL V V LDR +FE+AV+D+ + EC + GE DY +++ DL AF+ Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120 Query: 124 FMMTRLLRLPGVTNVKSNITMKQVKHS 150 LLRLPGV ++S + +VK++ Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVKNN 147 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 102 bits (253), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 88/155 (56%) Query: 2 STITVDRFDLALLAELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDP 61 S T+D+ D +LA LQ+DG I+ LG++V LS + RV+R+E VI Y A ++P Sbjct: 7 SVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNP 66 Query: 62 AVIGLGVTAFTNVTLDRQGETRGIQFEEAVQDMPEIMECFSITGEADYILRIVAPDLAAF 121 +G + F +TL+ + QF V +PE+ EC ++G+ DY+++ +A + Sbjct: 67 ESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEY 126 Query: 122 SEFMMTRLLRLPGVTNVKSNITMKQVKHSHVLPLD 156 + + LL+LPG KS + M+++K + LPLD Sbjct: 127 RKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLD 161 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 483,366 Number of extensions: 17577 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 9 Length of query: 172 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 93 Effective length of database: 1,245,805 Effective search space: 115859865 Effective search space used: 115859865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)