BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0117.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate dioxyge...   645   0.0  
gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate dioxyge...   172   5e-44

>gi|300311005|ref|YP_003775097.1| 4-hydroxyphenylpyruvate
           dioxygenase-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 364

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/352 (88%), Positives = 326/352 (92%)

Query: 14  STDLFDNPMGTDGFEFVEYAALDPLPIAAVLESMGFAAVARHRSKNVTLYRQGQINFIIN 73
           S DLFDNPMGTDGFEFVEY A DP  IA VLE MGF AVARHRSKNVTLYRQGQ+NFI+N
Sbjct: 13  SGDLFDNPMGTDGFEFVEYTAADPAAIARVLELMGFTAVARHRSKNVTLYRQGQVNFILN 72

Query: 74  AEPDSKAVEFAKVHGASVNAMAFRVKDAAAVYKRALEMGAEGVPAKLGPMELNIPAIKGI 133
            EP S A  FA+VHGASVNAMAFRVKDAA VYKRALE+GAEGV AKLGPMELNIPAI+GI
Sbjct: 73  GEPGSNAAAFAQVHGASVNAMAFRVKDAAQVYKRALELGAEGVEAKLGPMELNIPAIRGI 132

Query: 134 GGSLLYLVDRYGERGSIYDIDFEFFPNVERNPVGVGLTYIDHLTHNVVRGAMDTWSSFYE 193
           GGSLLYLVDRYGE GSIYD+DF+FFP VERNP GVGLTYIDHLTHNV+RGAMDTWSSFY 
Sbjct: 133 GGSLLYLVDRYGENGSIYDVDFQFFPGVERNPKGVGLTYIDHLTHNVMRGAMDTWSSFYT 192

Query: 194 RLFNFREIKYFDIEGKLTGLKSRAMTSPCGKIRIPINESADDKSQIEEFIKQYNGEGIQH 253
           RLFNFREIKYFDIEGK+TGL+SRAMTSPCGKIRIPINESADDKSQIEEFIKQYNGEGIQH
Sbjct: 193 RLFNFREIKYFDIEGKVTGLRSRAMTSPCGKIRIPINESADDKSQIEEFIKQYNGEGIQH 252

Query: 254 IALGTDDIYQTVRTLYQRKVPLQDTIATYYDLVERRIPGHKEDLAALRELKILIDGAPTE 313
           IALGTDDIYQTVR L +R VPLQDTI+TYYDLVERRIPGH EDL ALRELKILIDGAPT 
Sbjct: 253 IALGTDDIYQTVRALRERGVPLQDTISTYYDLVERRIPGHGEDLDALRELKILIDGAPTA 312

Query: 314 GQGLLLQIFTQTLIGPIFFEIIQRKGNDGFGEGNFKALFESIELDQIRRGVI 365
           GQGLLLQIFTQ LIGP+F+EIIQRKGNDGFGEGNFKALFESIELDQ+RRGVI
Sbjct: 313 GQGLLLQIFTQNLIGPVFYEIIQRKGNDGFGEGNFKALFESIELDQMRRGVI 364


>gi|300313061|ref|YP_003777153.1| 4-hydroxyphenylpyruvate
           dioxygenase [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  172 bits (435), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 139/264 (52%), Gaps = 13/264 (4%)

Query: 20  NPMGTDGFEFVEYAALDPLPIAAVLESMGFAAVARHRSKNVTLYRQGQINFIINAEPDSK 79
           NP+G DG EF+EYA  +PL + AVLE MGF  V RHRS+ V LY QG++N I+NA+  + 
Sbjct: 13  NPLGIDGIEFIEYATTEPLALGAVLERMGFEQVGRHRSREVVLYTQGEMNVIVNADATAW 72

Query: 80  AVEFAKVHGASVNAMAFRVKDAAAVYKRALEMGAEGVPAKLGPMELNIPAIKGIGGSLLY 139
           A    +V   S++A+A RV+DA   Y+R  E+GA  +P + G MELNIP + G G S++Y
Sbjct: 73  AGFDHEVQATSLSAIALRVRDANEAYRRVTELGAWAIPTRAGAMELNIPGVHGCGDSIIY 132

Query: 140 LVDRYGERGSIYDIDFEFFPNVERNPVGVGLTYIDHLTHNVVRGAMDTWSSFYERLFNFR 199
            VDRY +  SIYD+DF+      R    +   +   L   V    +  W  FY  L  F 
Sbjct: 133 FVDRYRDF-SIYDVDFKPASQERRQTSALAGLHFFGLVQAVQPDRLREWIDFYSTLMGFS 191

Query: 200 EIKYFDIEGKLTGL--KSRAMTSPCGKIRIPINESADDKSQIEEFIKQYNGEGIQHIALG 257
            +     EG+  G+  K   + SPC +  I + E       I      +  E +  + LG
Sbjct: 192 VLP----EGQFFGILPKGSLLVSPCRQFYIQLVEPPAGTEDI------HWEEELLRLGLG 241

Query: 258 TDDIYQTVRTLYQRKVPLQDTIAT 281
           T D+ Q VR L +R V   D   T
Sbjct: 242 TPDVLQAVRQLQERGVVFVDRAPT 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,150,016
Number of extensions: 50021
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)