BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0115.p (206 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 361 e-101 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 203 8e-54 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 188 3e-49 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 188 3e-49 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 183 9e-48 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 176/205 (85%), Positives = 193/205 (94%), Gaps = 1/205 (0%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTTLLMTLCG+PRASSG++IFEGQDITQ THEIMR G+AISPEGRRVF Sbjct: 30 IVTLIGANGAGKTTLLMTLCGRPRASSGRVIFEGQDITQLQTHEIMRRGLAISPEGRRVF 89 Query: 61 PSLTVLENLKMGAFFATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRAL 120 PSLTVLENLKMGAFFA+N+ +E+G+++VFGLFPRLKERA QRAGTMSGGEQQMLAIGRAL Sbjct: 90 PSLTVLENLKMGAFFASNEAIEQGIEYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRAL 149 Query: 121 MSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLEN 180 MSKPRLLLLDEPTLGLAPLVIAQIF+IIRTIR+ GVTVFLVEQNANKALGVADRGYVLEN Sbjct: 150 MSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNANKALGVADRGYVLEN 209 Query: 181 GHVVLADTGANLLANDAVRKAYLGH 205 GHVV++DTGANLLAN VRKAYLGH Sbjct: 210 GHVVMSDTGANLLANSDVRKAYLGH 234 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 203 bits (517), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 104/196 (53%), Positives = 137/196 (69%), Gaps = 1/196 (0%) Query: 10 AGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVFPSLTVLENL 69 AGK+T L+ + G +A G+++ GQD+ Q S H I+ G+ EGR +LTV ENL Sbjct: 47 AGKSTSLLAISGLVKAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENL 106 Query: 70 KMGAFFATN-DQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIGRALMSKPRLLL 128 +GA+ + D V ++ V+ LFP LK RA AG +SGGEQQMLAIGRALM+KP++LL Sbjct: 107 GLGAYTRKDKDGVARDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLL 166 Query: 129 LDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYVLENGHVVLADT 188 LDEP++GLAPL+I +IF I++ I G+TV LVEQN +AL +A RGYVLE G +VL D+ Sbjct: 167 LDEPSMGLAPLIIQEIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDS 226 Query: 189 GANLLANDAVRKAYLG 204 GANLL N V +AYLG Sbjct: 227 GANLLGNPKVVEAYLG 242 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 188 bits (477), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/208 (47%), Positives = 140/208 (67%), Gaps = 4/208 (1%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRAS--SGKIIFEGQDITQRSTHEIMRLGMAISPEGRR 58 L+TL G AGKTT L + G AS G I + GQ + + + E+++ +A+ PEGR Sbjct: 33 LVTLIGANGAGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFELVKDKLAMVPEGRG 92 Query: 59 VFPSLTVLENLKMGAFFATND-QVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIG 117 VF +++ ENL MGA+ + + Q+ + F +FPRLKERA Q AGT+SGGEQQMLA+ Sbjct: 93 VFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMA 152 Query: 118 RALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYV 177 RALMS P+LLLLDEP++GL+P+++ +IFE+IR + QG+T+ LVEQNA AL A RGYV Sbjct: 153 RALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYV 212 Query: 178 LENGHVVLADTGANLLANDAVRKAYLGH 205 +E+G + + +L + V+ AYLG Sbjct: 213 MESGLITMQGQAQQMLDDPRVKAAYLGE 240 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 188 bits (477), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/208 (47%), Positives = 140/208 (67%), Gaps = 4/208 (1%) Query: 2 LMTLCG-KPAGKTTLLMTLCGKPRAS--SGKIIFEGQDITQRSTHEIMRLGMAISPEGRR 58 L+TL G AGKTT L + G AS G I + GQ + + + E+++ +A+ PEGR Sbjct: 33 LVTLIGANGAGKTTTLKAITGTLPASRVEGHIEYLGQPLKGKKSFELVKDKLAMVPEGRG 92 Query: 59 VFPSLTVLENLKMGAFFATND-QVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLAIG 117 VF +++ ENL MGA+ + + Q+ + F +FPRLKERA Q AGT+SGGEQQMLA+ Sbjct: 93 VFTRMSIQENLLMGAYTSDDKGQIAADIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMA 152 Query: 118 RALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRGYV 177 RALMS P+LLLLDEP++GL+P+++ +IFE+IR + QG+T+ LVEQNA AL A RGYV Sbjct: 153 RALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYV 212 Query: 178 LENGHVVLADTGANLLANDAVRKAYLGH 205 +E+G + + +L + V+ AYLG Sbjct: 213 MESGLITMQGQAQQMLDDPRVKAAYLGE 240 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 183 bits (464), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 6/209 (2%) Query: 2 LMTLCGKP-AGKTTLLMTLCGKPRASSGKIIFEGQDITQRSTHEIMRLGMAISPEGRRVF 60 ++TL G AGKTT + + G + G++ G++IT +H+I R G+A SPEGRRVF Sbjct: 29 VVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLGGKNITGLDSHKIARFGLAHSPEGRRVF 88 Query: 61 PSLTVLENLKMGAF-----FATNDQVEEGVQHVFGLFPRLKERAGQRAGTMSGGEQQMLA 115 +++V +NL +GAF + ++ LFPRLKER Q AGT+SGGEQQMLA Sbjct: 89 ATMSVTDNLLLGAFPRFTRARPKGDIAHDLERALELFPRLKERQSQLAGTLSGGEQQMLA 148 Query: 116 IGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIRDQGVTVFLVEQNANKALGVADRG 175 + RA+M P ++LLDEP++GLAP+++ ++F II +++QGVT+ LVEQ A AL VAD G Sbjct: 149 MARAVMLNPEVILLDEPSMGLAPILVDEVFRIIVRLKEQGVTMLLVEQFAAAALNVADYG 208 Query: 176 YVLENGHVVLADTGANLLANDAVRKAYLG 204 YVLENG + + L + AV+ AYLG Sbjct: 209 YVLENGKISVHGPADKLQNDPAVKAAYLG 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 629,349 Number of extensions: 25786 Number of successful extensions: 406 Number of sequences better than 1.0e-08: 110 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 123 Length of query: 206 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 125 Effective length of database: 1,236,335 Effective search space: 154541875 Effective search space used: 154541875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)