BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0114.p (199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 318 2e-88 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 164 6e-42 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 152 2e-38 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 145 3e-36 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 145 3e-36 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 318 bits (815), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/198 (79%), Positives = 176/198 (88%), Gaps = 4/198 (2%) Query: 6 TNNQTLLDVSGLSMRFGGLLAVFG----FQNIRLFKTLSVVENLLVAQHNQINNNLVSGL 61 T+ + +LD + ++ + +A G FQNIRLFK+++VVENLLVAQH Q+N NL+SGL Sbjct: 61 TSGEIMLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGL 120 Query: 62 LKLPGYRRAEKDALDRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 121 LK P YR++E++AL RAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL Sbjct: 121 LKTPAYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLL 180 Query: 122 DEPAAGLNPQEKQELQQLINRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 181 DEPAAGLNPQEKQEL QLI+RLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT Sbjct: 181 DEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGT 240 Query: 182 PELVRNDERVIKAYLGEE 199 PE VR+DERVIKAYLGEE Sbjct: 241 PEQVRSDERVIKAYLGEE 258 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 164 bits (414), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 1/170 (0%) Query: 30 FQNIRLFKTLSVVENLLVAQHNQINNNLVSGLLKLPGYRRAEKDALDRAAYWLDQLGLTA 89 FQNIR+FK ++++EN++V H+ +N + S LL L G+R AEK+A +RA L + L Sbjct: 83 FQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDH 142 Query: 90 LANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELQQLINRLRREHGV 149 A+ A +LSYG QR++E AR + TKP+LLLLDEP AG+NP EK EL I + ++ G Sbjct: 143 KAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNI-KQRGF 201 Query: 150 AVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLGEE 199 + +IEHDM +MG+ +RI V+ GK I GTP+ ++N++ VI+AYLG+E Sbjct: 202 TIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 110/180 (61%) Query: 18 SMRFGGLLAVFGFQNIRLFKTLSVVENLLVAQHNQINNNLVSGLLKLPGYRRAEKDALDR 77 + R G L FQN+ LFK LSV +N+++ + N + + V ++ L RR DA + Sbjct: 77 TARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRARRERIDARAQ 136 Query: 78 AAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELQ 137 A + L L A A R+ G L YGLQ+RVE+AR ++ +PRLLLLDEP AG+ EK E+ Sbjct: 137 AEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAGMTVTEKSEMA 196 Query: 138 QLINRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 197 + R + A+LLIEHD+ L+ G+SDR++V+ HG I G P VR D VI+AYLG Sbjct: 197 DFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQDAAVIEAYLG 256 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/168 (44%), Positives = 110/168 (65%), Gaps = 1/168 (0%) Query: 30 FQNIRLFKTLSVVENLLVAQHNQINNNLVSGLLKLPGYRRAEKDALDRAAYWLDQLGLTA 89 FQNIRLF ++V+EN++V H + N+ + + R E +++ LD +G+ Sbjct: 86 FQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQ 145 Query: 90 LANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELQQLINRLRREHGV 149 A R A LSYG QRR+EIAR + T P+LL LDEPAAG+N EK L++L+ +++ E G Sbjct: 146 FAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIQAE-GK 204 Query: 150 AVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 197 +LLIEHD+ L+MG+ +RI V+++GKPI G P V+ + VI+AYLG Sbjct: 205 TILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 75/168 (44%), Positives = 110/168 (65%), Gaps = 1/168 (0%) Query: 30 FQNIRLFKTLSVVENLLVAQHNQINNNLVSGLLKLPGYRRAEKDALDRAAYWLDQLGLTA 89 FQNIRLF ++V+EN++V H + N+ + + R E +++ LD +G+ Sbjct: 86 FQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQ 145 Query: 90 LANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELQQLINRLRREHGV 149 A R A LSYG QRR+EIAR + T P+LL LDEPAAG+N EK L++L+ +++ E G Sbjct: 146 FAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIQAE-GK 204 Query: 150 AVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPELVRNDERVIKAYLG 197 +LLIEHD+ L+MG+ +RI V+++GKPI G P V+ + VI+AYLG Sbjct: 205 TILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 606,506 Number of extensions: 24034 Number of successful extensions: 332 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 123 Length of query: 199 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,236,335 Effective search space: 145887530 Effective search space used: 145887530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)