BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0108.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide prot...   304   4e-84

>gi|300310990|ref|YP_003775082.1| lipoprotein signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  304 bits (779), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 145/225 (64%), Positives = 177/225 (78%)

Query: 44  ELHQYRYQQININTCTVDPQQDSLRMYWKDPAGKVFGTFSALRNWLRPQGKDMVCATNAG 103
           E+ QY+Y Q+ I+TC  DP+ D++RMYWKD  G     F  L   LR QG+DMVCATNAG
Sbjct: 46  EVKQYQYHQVFISTCRADPRTDTIRMYWKDANGVPLANFLRLDAHLRSQGQDMVCATNAG 105

Query: 104 IYDKELRPLGLYVEGGVTLRKLNTRRDAYGNFYLQPNGVFIVEEGRARIVDTATVDGDRE 163
           IYDK+L+PLGLYVE GV LRKLNTR++AYGNFYLQPNGVF++ + +A IV+T+    +  
Sbjct: 106 IYDKQLQPLGLYVENGVQLRKLNTRQNAYGNFYLQPNGVFVLGDRQAYIVETSDYAAEGS 165

Query: 164 RWLSQAVYATQSGPLMLRNGEINAAFDPGSINLFVRNAVCIDPAQKVILAIARNPISFHD 223
            W + A +ATQSGPLML  G+IN  FDP S+N+ VRNAVC+D A  V LAIARNPISF D
Sbjct: 166 LWNTVARFATQSGPLMLVEGKINHRFDPDSVNMVVRNAVCLDHAGVVTLAIARNPISFFD 225

Query: 224 FALFLRDRLRCVDALYLDGNISRMYPSLEADLGPAFGAIIAVVKT 268
           FA FLRD L+C DALYLDG+ISRMYP+LEA++GPAFGA+IAVV+T
Sbjct: 226 FATFLRDELKCSDALYLDGSISRMYPTLEANMGPAFGAMIAVVRT 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 833,574
Number of extensions: 33116
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)