BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0097.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312519|ref|YP_003776611.1| leucyl/phenylalanyl-tRNA-protei...   376   e-106

>gi|300312519|ref|YP_003776611.1| leucyl/phenylalanyl-tRNA-protein
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  376 bits (965), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 181/237 (76%), Positives = 206/237 (86%)

Query: 1   MISWLDVDSPFPDVSKALAEPAGLLAAGADLSPQRLLEAYRRGIFPWFSEGQPILWWSTD 60
           MI+WLD+D+PFPDVS+AL +P GLLAAGADLSP RLLEAYR GIFPWFSEGQPILWWSTD
Sbjct: 1   MIAWLDLDTPFPDVSRALKDPPGLLAAGADLSPARLLEAYRHGIFPWFSEGQPILWWSTD 60

Query: 61  PRMVLYTDRFIISDSLKKTLRKIERSRHTDRRWEIRFDSAFRDVMRACAGPRRDDAGTWI 120
           PRMVL TD+F++SDSLKKTLR+IERSR  D  W++ FD+AF  VM+ CAGPRR + GTWI
Sbjct: 61  PRMVLRTDQFVVSDSLKKTLRRIERSRQGDGLWQVSFDTAFEQVMQGCAGPRRHEHGTWI 120

Query: 121 SKDIVDGYCGLHRAGYAHSAEVWLEGKLVGGAYGVSIGQMFYGESMFARVTDASKVALAY 180
           S DI+ GY GLH AGYAHSAEVWL G+LVGGAYGVSIG+MFYGESMFARV+DASKVALA+
Sbjct: 121 SPDIMQGYLGLHLAGYAHSAEVWLNGELVGGAYGVSIGRMFYGESMFARVSDASKVALAH 180

Query: 181 LVHFLRRHGVQMIDCQQETPHLASLGAIPIPRNDFIKHLRVAIEAPQIGFWHPLDLF 237
           LV FLR HGV+MIDCQQET HLASLGA PI R++F++HLR AI+ PQI  W PLDL 
Sbjct: 181 LVFFLRSHGVEMIDCQQETSHLASLGARPIARSEFLRHLRAAIQWPQIRGWAPLDLL 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 784,502
Number of extensions: 30448
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)