BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0096.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312520|ref|YP_003776612.1| arginyl-tRNA:protein arginylylt...   447   e-127

>gi|300312520|ref|YP_003776612.1| arginyl-tRNA:protein
           arginylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  447 bits (1149), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 211/240 (87%), Positives = 224/240 (93%)

Query: 1   MTHLKDLPFSTLQFYATAPYPCSYLDNQQARSQVATPSHLINADVYSELVKTGFRRSGIF 60
           MTHLKDLPFSTLQFYATAPYPCSYLD+QQARSQVATPSHLINADVYSELVKTGFRRSGIF
Sbjct: 1   MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIF 60

Query: 61  TYRPYCDGCQACTPVRIKTAEFIPNRSQRRAWNKNSGLVTLVTNLTYAYEHYELYLRYQS 120
           TYRPYCDGC ACTPVRI+ A+F  NRSQRRAW +N GL TLVTNLTYA+EHYELYLRYQ 
Sbjct: 61  TYRPYCDGCHACTPVRIRVADFQRNRSQRRAWERNRGLQTLVTNLTYAHEHYELYLRYQC 120

Query: 121 VRHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLDDGLSSVYTFYD 180
            RHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVL+DGLSSVYTF+D
Sbjct: 121 ARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFD 180

Query: 181 PDVEGSSYGTYNILWQIEQARQLGIPYVYLGYWIKESAKMAYKTNFQPLEALQNGNWTAL 240
           PD+  +S+GTYNILWQIEQARQL +PYVYLGYWIKES KMAYKTNFQPLEAL +G W+ L
Sbjct: 181 PDLPTASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNFQPLEALYDGEWSPL 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 749,091
Number of extensions: 28477
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)