BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0094.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 448 e-127 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 298 4e-82 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 274 4e-75 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 271 4e-74 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 263 8e-72 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 448 bits (1153), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/240 (92%), Positives = 230/240 (95%) Query: 1 MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEASDGEIFI 60 MI V QLQK++G+AHILRGIDCEIR EVVCVIGPSGSGKSTFLRCLNGLEE SDG+IFI Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRFNLFPHMSVLENLIMAPMQVKKLSRREAVLVAEKL 120 +GVK+NDP VNLN LRA LGMVFQRFNLFPHM+VLENLIMAPMQVKKLSRREAVLVAEKL Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 181 TLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGEPKNERTRDFLRKVL 240 LAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLG+P +ERTRDFLRKVL Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 298 bits (762), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 144/240 (60%), Positives = 183/240 (76%) Query: 1 MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEASDGEIFI 60 MI VK++ K +G +L+ + + + EVVC+IGPSGSGKST LRC+NGLE G+I I Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRFNLFPHMSVLENLIMAPMQVKKLSRREAVLVAEKL 120 DG +V+ +++ LR +GMVFQRFNLFPH +VLEN+ P+ V L+R +A A L Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 L KVGL + DA+P QLSGGQQQRVAIAR+LAM+P+ +LFDEPTSALDPELVGEVL VM+ Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 TLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGEPKNERTRDFLRKVL 240 TLA +GMTM+VVTHEMGFAREV+DRV F+ G I+E G QVL EP++ RT+DFLR+V+ Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 274 bits (701), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 140/245 (57%), Positives = 181/245 (73%), Gaps = 5/245 (2%) Query: 1 MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEASDGEIFI 60 ++ V L+K +G +L+ +D + S+VV VIGPSGSGKSTFLRCLNGLE+A G + + Sbjct: 5 IVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 Query: 61 DGVKVND-----PHVNLNTLRAGLGMVFQRFNLFPHMSVLENLIMAPMQVKKLSRREAVL 115 G V + P L+ LRA +GMVFQ FNLFPH++VL+N+ +AP ++ +SR+ A Sbjct: 65 CGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQQ 124 Query: 116 VAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 175 A +LL+KVGL K A+P LSGGQ+QRVAIARALAMEP+VMLFDEPTSALDPELVGEV Sbjct: 125 QALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGEV 184 Query: 176 LTVMKTLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGEPKNERTRDF 235 L V++ LA EGMTM++VTHEMGFAREV+D V+ +D G I+E GPP + P+ RTR F Sbjct: 185 LQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRSF 244 Query: 236 LRKVL 240 L+ +L Sbjct: 245 LQTML 249 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 271 bits (693), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 131/240 (54%), Positives = 172/240 (71%) Query: 1 MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEASDGEIFI 60 MI + + K YG +L +++ +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRFNLFPHMSVLENLIMAPMQVKKLSRREAVLVAEKL 120 DGV V DP NL+ LRA +GMVFQ F LFPH+S+ ENL + ++V S+ EA K Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 L +VGLL D FP QLSGGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 TLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGEPKNERTRDFLRKVL 240 LA+EGMTM+VVTHEMGFAR+V++RV+F+D+GV++E+ + +P++ER RDFL K++ Sbjct: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKII 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 263 bits (673), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 126/236 (53%), Positives = 176/236 (74%) Query: 1 MISVKQLQKQYGEAHILRGIDCEIRESEVVCVIGPSGSGKSTFLRCLNGLEEASDGEIFI 60 +I++ ++K++G+ +L+GI ++ EV+ +IG SGSGKST LRC+NGLE +G I + Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 61 DGVKVNDPHVNLNTLRAGLGMVFQRFNLFPHMSVLENLIMAPMQVKKLSRREAVLVAEKL 120 G K+ + L LR +GM+FQ+FNLFPH+SV N+++APM VK +S EA+ A+ Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 L+KVGL K DA+P+QLSGGQQQRVAIARAL+M P+ +L DE TSALDPELV EVLTVM+ Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 181 TLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGEPKNERTRDFL 236 LA+EGMT+++VTHEM FAREV +R++F+ QG + E GPP+++ G PK + F+ Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 697,465 Number of extensions: 27280 Number of successful extensions: 563 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 148 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)