BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0092.p (259 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309409|ref|YP_003773501.1| glutamine ABC transporter perip... 435 e-123 gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/sign... 214 4e-57 gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signa... 134 7e-33 gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign... 110 8e-26 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 89 4e-19 >gi|300309409|ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 435 bits (1118), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/259 (84%), Positives = 240/259 (92%) Query: 1 MSLKKLVLLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDIIKA 60 MSLKKL+ A S LALS A +A AADQTYVVGAGGTYRPFEFETPKKELVGFDID+IKA Sbjct: 1 MSLKKLLTTAASALALSCAAGTALAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKA 60 Query: 61 IAKASGFQIKLVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLPYFPAEQVIIT 120 I++AS F+I+LVSTPWEGIFATLGQGDRDIIISGITIT+KRAQMVDFSLPYFPAEQVIIT Sbjct: 61 ISQASNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIIT 120 Query: 121 GAGSKVAALADLKKLQVGVVNSTAGDIILSEEVGKSSTAIHRFDNTPLMLEELYRGGVDA 180 A +K+ +L+DLKK QV VVNSTAGDI++SEE+GK+STAIHRFDNT LMLEELYRGGVDA Sbjct: 121 NADAKITSLSDLKKTQVAVVNSTAGDIVVSEELGKASTAIHRFDNTVLMLEELYRGGVDA 180 Query: 181 AIGDVGVIKFYIKSHPEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGT 240 A+GDVGVIKFYIKSHPEK+FKVVGD+KF RQYFGIAVKKGNKEL DKINAGLKKIVADGT Sbjct: 181 AVGDVGVIKFYIKSHPEKKFKVVGDSKFVRQYFGIAVKKGNKELLDKINAGLKKIVADGT 240 Query: 241 YAKIYKEWFDANVPTLPLQ 259 YAKIYK WFD +VPTLPL+ Sbjct: 241 YAKIYKTWFDGDVPTLPLK 259 >gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 214 bits (546), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/260 (45%), Positives = 163/260 (62%), Gaps = 14/260 (5%) Query: 4 KKLVLLAGSVLALSLTAVSAQ-------------AADQTYVVGAGGTYRPFEFETPKKEL 50 + L L AG V L L A Q A + YVVG Y PF E +K++ Sbjct: 10 RALALTAGFVGMLGLAACGKQEDKSATAAAPQAAAPARVYVVGVESAYAPFSSENEQKDV 69 Query: 51 VGFDIDIIKAIAKASGFQIKLVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLP 110 VGFDIDI+KA+AK G ++K V TP+EG F L QGDRD++IS ITIT++R + V FS P Sbjct: 70 VGFDIDIMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKKSVAFSEP 129 Query: 111 YFPAEQVI-ITGAGSKVAALADLKKLQVGVVNSTAGDIILSEEVGKSSTAIHRFDNTPLM 169 YF A Q I + A +KV+ + DLK L VG ++T+GD ++ + +GK+S I RFD+TPL Sbjct: 130 YFVATQTIALPAADTKVSKMEDLKPLTVGTQSATSGDELVQQVLGKNSAKIKRFDSTPLA 189 Query: 170 LEELYRGGVDAAIGDVGVIKFYIKSHPEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKIN 229 L+EL GGVDA + D V+K YI ++P + + V D F ++ +GIAV+K + EL KIN Sbjct: 190 LKELESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIAVRKDDPELLAKIN 249 Query: 230 AGLKKIVADGTYAKIYKEWF 249 GL ++ ADG++A I ++F Sbjct: 250 KGLAEMKADGSFAAISAQYF 269 >gi|300312810|ref|YP_003776902.1| glutamine ABC transporter/signal transduction system periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 134 bits (337), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 138/254 (54%), Gaps = 7/254 (2%) Query: 1 MSLKKLVLLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDIIKA 60 M L L+ S++ALS+ SA+A +T VV + PFEF+ + + VGFDID+ A Sbjct: 1 MKLPFAKLVFASLVALSVVGASARA--ETLVVACDTAFVPFEFKD-RNQYVGFDIDLWDA 57 Query: 61 IAKASGFQIKLVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLPYFPAEQVIIT 120 IAK G KL + GI L + D+ ++GITI ++R +++DFS Y+ + ++ Sbjct: 58 IAKDIGVTYKLQPMDFNGIIPALQTKNVDVALAGITIKDERKKVIDFSDGYYDSGFSLMV 117 Query: 121 GAGSKVAALADLKKLQVGVVNSTAGDIILSEEVGKSSTAIHRFDNTPLMLEELYRGGVDA 180 GS + ++ADL + V + T+ + +T +H+F N EL G VDA Sbjct: 118 PVGSSIKSVADLAGKALAVKSGTSA--FDYAKANFKATELHQFPNIDNAYLELQTGRVDA 175 Query: 181 AIGDVGVIKFYIKSHPEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGLKKIVADGT 240 A+ D + +YI + + + KVVG QY GI KG+ L K+NA L KI ADG Sbjct: 176 AMHDTPNVLYYIATAGKGRAKVVGTQMMAHQY-GIGFPKGS-PLVPKVNAALAKIKADGR 233 Query: 241 YAKIYKEWFDANVP 254 YA+IY++WF A P Sbjct: 234 YAEIYRKWFGAEPP 247 >gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 110 bits (276), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/265 (32%), Positives = 130/265 (49%), Gaps = 24/265 (9%) Query: 8 LLAGSVLALSLTAVSAQAADQTYVVGAGGT--------YRPFEFETPKK-ELVGFDIDII 58 LLAG AL +++S AAD V + GT Y PF F+ PK EL GF++D+ Sbjct: 9 LLAGVGAALLASSLSVSAADLLQSVKSSGTLKVALEGNYPPFNFKDPKTGELTGFEVDVA 68 Query: 59 KAIAKASGFQIKLVSTPWEGIFATLGQGDRDIIISGITITEKRAQMVDFSLPYF--PAEQ 116 K +A G + +T W GI A LG G D+II+ + IT++R + DFS PY A+ Sbjct: 69 KLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQL 128 Query: 117 VIITGAGSKVAALADLKKLQVGVVNSTAGDIILSEEVGKSSTAI--HRFDNTPLMLEELY 174 ++ + +L DLK ++G+ T E+ K+ I + +P L +L Sbjct: 129 IVRKDEKREFKSLEDLKGKKLGLGQGTN-----FEQKAKAVPGIDVRTYPGSPEYLADLA 183 Query: 175 RGGVDAAIGDVGVIKFYIKSH--PEKQFKVVGDAKFTRQYFGIAVKKGNKELQDKINAGL 232 G +DAA+ D ++ + +KS P K +G GI +KGN E + +N L Sbjct: 184 AGRIDAALNDSLLVGYILKSTNLPLKAGSPIG----AVDKIGIPFRKGNPEFKAALNKAL 239 Query: 233 KKIVADGTYAKIYKEWFDANVPTLP 257 I ADG++ ++WF +V P Sbjct: 240 ADIKADGSFKAASEKWFGIDVSQPP 264 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 108/217 (49%), Gaps = 7/217 (3%) Query: 40 PFEFETPKKELVGFDIDIIKAIAKASGFQIKLVSTPWEGIFATLGQGDRDIIISGITITE 99 P+ + K L+G D++ + +AK G ++++V T L DI+IS +IT Sbjct: 50 PYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTLTNRVPYLQTNKADIVISAFSITP 109 Query: 100 KRAQMVDFSLPYFPAEQVIITGAGSKVAALADLKKLQVGVVNSTAGDIILSEEVGKSSTA 159 +RA+++DFS+PY P V+ K+ + ADL ++ T D L+ ++ SS Sbjct: 110 ERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKKIIATRGTTNDQELT-KIAPSSAT 168 Query: 160 IHRFDNTPLMLEELYRGGVDAAIGDVGVIKFYIKSHPEKQFKVVGDAKFTRQ--YFGIAV 217 I RFD+ + + G D ++K + +P + ++K T + + + Sbjct: 169 ITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPSRDI----ESKLTLKANLLAVGL 224 Query: 218 KKGNKELQDKINAGLKKIVADGTYAKIYKEWFDANVP 254 +KG L++KI+ ++ +++G IYK++ +A +P Sbjct: 225 RKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELP 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 651,647 Number of extensions: 23051 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 15 Length of query: 259 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 176 Effective length of database: 1,226,865 Effective search space: 215928240 Effective search space used: 215928240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)