BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0091.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...   486   e-139
gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    75   9e-15

>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  486 bits (1252), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 262/301 (87%)

Query: 7   KEIRLIGAPTDIGASRRGASMGPEALRVANLQQALQQHGLAVTDGGDVSGPPNPQQGPVQ 66
             IR++GAPTD+GASRRGASM P ALRVA LQ+ LQQHGL V DGGD++GP NPQQ PVQ
Sbjct: 2   NRIRMMGAPTDVGASRRGASMAPAALRVAELQRGLQQHGLDVIDGGDLAGPANPQQPPVQ 61

Query: 67  GFRHLEQVVAWNRAVHEAVHGALHGGQIPVLLGGDHALAIGSIAAVAQHCREQGKKLLVL 126
           G RHLEQVV WN+ VHEAV   L  G++P+L+GGDHALA+GSIAAVA HCR QGK+L VL
Sbjct: 62  GLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQGKELRVL 121

Query: 127 WLDAHADANTSDSTPTGNIHGMPVACLLGNGPDALTHIGGLVPALQPDAIRQVGIRSVDR 186
           WLDAHADANTS STPTGNIHGMPVACLLG GP ALT IGG  PALQP  I QVGIRSVDR
Sbjct: 122 WLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQVGIRSVDR 181

Query: 187 DEKRHLHELGLRVYDMRHIDEHGMRVAMEQALSGIDAGTHLHVSFDIDFLDPAVAPGVGT 246
           +EKRHL ELG+RV+DMRHIDE+GMR  ME+AL+G+   THLHVSFD+DFLD A+APGVGT
Sbjct: 182 EEKRHLRELGVRVFDMRHIDEYGMRQTMEEALAGVGPQTHLHVSFDVDFLDAALAPGVGT 241

Query: 247 AVPGGPTYRETQLCMEMIADTGRLASLDVMELNPACDVRNQTAELVVELVESLFGKSTLI 306
           AVPGGPTYRE QLCMEMIADTG LASLDVMELNPACDVRNQTAELVV+LVESLFGKSTLI
Sbjct: 242 AVPGGPTYREAQLCMEMIADTGALASLDVMELNPACDVRNQTAELVVDLVESLFGKSTLI 301

Query: 307 R 307
           R
Sbjct: 302 R 302


>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 127/307 (41%), Gaps = 49/307 (15%)

Query: 8   EIRLIGAPTDIGASRR-GASMGPEALRVANL--------QQALQQHGLAVTDGGDVSGPP 58
           ++  +G P DIG S R G   GP  +R  ++         +A     L V D GDV+  P
Sbjct: 36  DVGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNMATRAAPFDSLKVADLGDVALNP 95

Query: 59  NPQQGPVQGFRHLEQVVAWNRAVHEAVHGALHGGQIPVLLGGDHALAIGSIAAVAQHCRE 118
                    +  L+ V    R + EA       G   + LGGDH L +  + A+A++   
Sbjct: 96  ---------YSLLDSV----RMIEEAYDRIYATGCKTISLGGDHTLTLPILRALARYRGP 142

Query: 119 QGKKLLVLWLDAHADANTSDSTPTGNI-HGMPVACLLGNGPDALTHIGGLVPALQPDAIR 177
            G    ++ +DAHAD N  D+     I HG P       G             L P  + 
Sbjct: 143 VG----LIHVDAHADVN--DTMNGEKIAHGTPFRRAFEEG------------LLDPQRVV 184

Query: 178 QVGIRSVDR--DEKRHLHELGLRVYDMRHIDEHGMRVAMEQALSGIDAGTHLHVSFDIDF 235
           Q+G+R      D+       G RV          +   ME+  + +  G  ++++FDID 
Sbjct: 185 QIGLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQMGDGP-VYLTFDIDG 243

Query: 236 LDPAVAPGVGTAVPGGPTYRETQLCMEMIADTGRL--ASLDVMELNPACDVRNQTAELVV 293
           LDPA APG GT   GG T    Q  +E+I     L   S DV+E++P  D    TA +  
Sbjct: 244 LDPAFAPGTGTPEIGGLT---VQQGLEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAA 300

Query: 294 ELVESLF 300
            L   + 
Sbjct: 301 NLAYEML 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 950,870
Number of extensions: 39987
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)